Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttcttataacatgtttatgcagtattgcagtccatgaattgttacaacttggtgactcctctgatggtttgtatcttcattctttttattcttatcacag

Basic information

species Zea mays
transcript GRMZM2G540538_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G540538_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g41590.1 (Oryza sativa), 5'ss of exon 3
GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttcttataacatgtttatgcagtattgcagtccatgaattgttacaacttggtgactcctctgatggtttgtatcttcattctttttattcttatcacag
|||||| |||||||| |||||| |||||||||||||||||||||||||||| | ||             | |   | |    ||   |  |  || | ||  ||||||| || | |||| || |  ||||||||| || |  |||||       
GTATGATGAGTTGGCCAGCAAGGGCAATGTTGAATATATTGCCGGAGgtaacgctt-------------tgtcttgaacctgagcttacaatatggttcatattggtgaatcttttgattgtcta-atcttcattgttctc-ttcttccag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18654569|gb|BM499374.1|BM499374
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|9952767|gb|BE639350.1|BE639350
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|211299293|gb|FK964182.1|FK964182
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|28361646|gb|CB240002.1|CB240002
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|211406117|gb|FK964261.1|FK964261
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|211538004|gb|FL000878.1|FL000878
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|211534999|gb|FL000868.1|FL000868
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         -AGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|19272533|gb|BM888789.1|BM888789
EST:     CTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: CTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|60358287|gb|DN225260.1|DN225260
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|211295007|gb|FK964152.1|FK964152
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|28931167|gb|CB334528.1|CB334528
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|211297153|gb|FK964172.1|FK964172
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|211299292|gb|FK964181.1|FK964181
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|211297154|gb|FK964173.1|FK964173
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGA-                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|211301432|gb|FK964199.1|FK964199
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|18654717|gb|BM499522.1|BM499522
EST:     GTATGACGAGTTGGCTATGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTA-GCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|211538003|gb|FL000877.1|FL000877
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGA-                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|60355538|gb|DN222511.1|DN222511
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|211292867|gb|FK964139.1|FK964139
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|18649011|gb|BM497830.1|BM497830
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|30031919|gb|CB833770.1|CB833770
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|211406124|gb|FK964268.1|FK964268
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         -AGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|211295014|gb|FK964159.1|FK964159
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|211403574|gb|FK964250.1|FK964250
EST:     GTATGACGAGTTKGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         -AGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|211403570|gb|FK964246.1|FK964246
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|30087102|gb|CB885310.1|CB885310
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|5555550|gb|AI881501.1|AI881501
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|211303575|gb|FK964215.1|FK964215
EST:     NNN-GACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         -AGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|19351360|gb|BM895892.1|BM895892
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|18649868|gb|BM498687.1|BM498687
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|211401016|gb|FK964225.1|FK964225
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|211535006|gb|FL000875.1|FL000875
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|211301430|gb|FK964197.1|FK964197
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         -AGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|29543823|gb|CB604203.1|CB604203
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|211411224|gb|FK964285.1|FK964285
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|18649867|gb|BM498686.1|BM498686
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|26557766|gb|CA830001.1|CA830001
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGCTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|211403564|gb|FK964240.1|FK964240
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         -AGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|211408681|gb|FK964276.1|FK964276
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGA-                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|211408686|gb|FK964281.1|FK964281
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         -AGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|18384280|gb|BM417479.1|BM417479
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|20811213|gb|BQ295691.1|BQ295691
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|211403575|gb|FK964251.1|FK964251
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|211301429|gb|FK964196.1|FK964196
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         -AGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|18654570|gb|BM499375.1|BM499375
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|13557954|gb|BG549310.1|BG549310
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|18654716|gb|BM499521.1|BM499521
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|19436637|gb|BM953047.1|BM953047
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|211295005|gb|FK964150.1|FK964150
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         -AGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|211303579|gb|FK964219.1|FK964219
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         -AGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|211406116|gb|FK964260.1|FK964260
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|26456972|gb|CA828555.1|CA828555
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|211408679|gb|FK964274.1|FK964274
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|211299298|gb|FK964187.1|FK964187
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|211301441|gb|FK964208.1|FK964208
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|24773803|gb|CA409057.1|CA409057
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|211401021|gb|FK964230.1|FK964230
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         -AGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|28361834|gb|CB240190.1|CB240190
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|8367104|gb|BE050049.1|BE050049
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|211403569|gb|FK964245.1|FK964245
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|40335337|gb|CK369407.1|CK369407
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|211403566|gb|FK964242.1|FK964242
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|211295016|gb|FK964161.1|FK964161
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|211295008|gb|FK964153.1|FK964153
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTTGAATATATTGCCGGAG                         -AGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTT-GAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|211303574|gb|FK964214.1|FK964214
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         -AGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|18384281|gb|BM417480.1|BM417480
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|211299303|gb|FK964192.1|FK964192
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         -AGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|24961588|gb|CA483591.1|CA483591
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|211406111|gb|FK964255.1|FK964255
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         -AGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|211406113|gb|FK964257.1|FK964257
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|211406118|gb|FK964262.1|FK964262
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|13562186|gb|BG550406.1|BG550406
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|9953243|gb|BE639826.1|BE639826
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAG                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA
EST: gi|211535002|gb|FL000871.1|FL000871
EST:     GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGA-                         GAGCCACCCAGAACTCTATCAGGGTTGCCCAA
genomic: GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1011

GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1280

GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1145

GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1633

GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttc ... cttatcacagGAGCCACCCAGAACTCTATCAGGGTTGCCCAA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTATGACGAGTTGGCTAGCAAGAGCAATGTTGAATATATTGCCGGAGgtaatgtttcttataacatgtttatgcagtattgcagtccatgaattgttacaacttggtgactcctctgatggtttgtatcttcattctttttattcttatcacag

- - - - - - - - AGCAAG
- - - - - - - -  GCAAGA
- - - - - - - - - - AGAGCA