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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTGAAGATTGCTGATCTGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAGgtactggttaccatctggagttggaaggctggatgcacttttaatttttaacagagtttctgagaatgatccagtaagttctctatattctgtatctgtatag

Basic information

species Zea mays
transcript GRMZM2G495626_T04
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G495626_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g67160.1 (Oryza sativa), 5'ss of exon 3
ACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTGAAGATTGCTGATCTGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAGgtactggttaccatctggagttggaaggctggatgcacttttaatttttaacagagtttctgagaatgatccagtaagttctctatat-tctgtatctgtatag---
|||||||||| |||| |||||||| ||||| ||| |||| ||||||||||| || || |||||||| |||||||| || |||||||||||||| ||||||||| || ||||                         || | | || |     |   |||||||  ||| || || || |||  ||||| ||||| | ||| | |   
ACAAAACCTGTTGGTCGACAAGGAAAAGGGGATATTGAAAATTGCTGATCTTGGGCTAGGTAGGGCGTTCACTGTTCCTATGAAAAGCTACACACATGAGgtaatgtttac-------------------------acatctcatctgggctaa--tttctgaacatgctctagcaatttccttatatgtctgt-tttgtgttgcag

upper sequence: GRMZM2G495626_T03 (Zea mays), 5'ss of exon 3
lower sequence: PP1S61_200V6.1 (Physcomitrella patens), 5'ss of exon 4
ACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTGAAGATTGCTGATCTGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAGgt--actggttaccatctggagttggaaggctggatgcacttttaatttttaacagagtttctgagaatgatccag--taagttctctatattctgtatctgtatag-----------
 |||||||| || || ||   | | |||||  |  | || ||||| ||| | ||||| || |||||||||||||| || ||||| ||||| |||||||||||    || ||   | || |  ||  |   ||| ||   |  || ||    ||| |  ||        || ||  |  |  | | || | || ||| |||     |            
CCAAAACCTCCTCGTTGATTGGAAAAAGGGCCTCTTAAAAATTGCGGATTTAGGACTAGGAAGGGCTTTCACTGTCCCAATGAAGAGCTATACCCATGAGgtcagttgattgtga-ctcgccttttatccctgcat-tgcgattgatgcgaaaccgccttcacatttttggtctcgcttttggtatcaagatgctgaatcctaggacttgccgcgcag

upper sequence: GRMZM2G495626_T03 (Zea mays), 5'ss of exon 3
lower sequence: EFJ19614 (Selaginella moellendorffii), 5'ss of exon 4
ACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTGAAGATTGCTGATCTGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAGgtactggttaccatctggagttggaa---ggctggatgcacttttaatttttaacagagtttctgagaatgatccagtaagttctctatattctgtatctgtatag
 |||||||| || || ||||||||||| || ||  | |||||||||||  ||||||||||  ||||||||||||| ||| |||| ||||| ||||| |||||     | | |||| |    || ||   | |  || | | ||||   |  ||  ||                                                 
GCAAAACCTTCTCGTCGACAAGGAGAAAGGAATCTTAAAGATTGCTGACTTGGGACTCGGCCGGGCTTTCACTGTTCCCTTGAAGAGCTATACCCACGAGgttagattgagcatcagttcatgaaactcgacctgacg-atttttctctcgtattag-------------------------------------------------

upper sequence: GRMZM2G495626_T03 (Zea mays), 5'ss of exon 3
lower sequence: EFJ06603 (Selaginella moellendorffii), 5'ss of exon 4
ACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTGAAGATTGCTGATCTGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAGgtactggttaccatctggagttggaa---ggctggatgcacttttaatttttaacagagtttctgagaatgatccagtaagttctctatattctgtatctgtatag
 |||||||| || || ||||||||||| || ||  | |||||||||||  ||||||||||  ||||||||||||| ||| |||| ||||| ||||| |||||     | | |||| |    || ||   | |  || | | ||||   |  |   ||                                                 
GCAAAACCTTCTCGTCGACAAGGAGAAAGGAATCTTAAAGATTGCTGACTTGGGACTCGGCCGGGCTTTCACTGTTCCCTTGAAGAGCTATACCCACGAGgttagattgagcatcagttcatgaaactcgacctgacg-atttttctctcgtgttag-------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149101462|gb|EE187582.2|EE187582
EST:     TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAG                         ATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT
genomic: TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAGgtactggtta ... atctgtatagATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT
EST: gi|74238747|gb|DT646661.1|DT646661
EST:     TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAG                         ATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGAAGCAACACAT
genomic: TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAGgtactggtta ... atctgtatagATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT
EST: gi|101398284|gb|EB821015.1|EB821015
EST:     TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAG                         ATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT
genomic: TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAGgtactggtta ... atctgtatagATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT
EST: gi|71450237|gb|DR831287.1|DR831287
EST:     TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAG                         ATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT
genomic: TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAGgtactggtta ... atctgtatagATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT
EST: gi|71771339|gb|DR969276.1|DR969276
EST:     TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAG                         ATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT
genomic: TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAGgtactggtta ... atctgtatagATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT
EST: gi|91055879|gb|EB166297.1|EB166297
EST:     TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAACTACACCCATGAG                         ATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT
genomic: TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAGgtactggtta ... atctgtatagATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT
EST: gi|87157025|gb|DY401814.1|DY401814
EST:     TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAG                         ATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT
genomic: TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAGgtactggtta ... atctgtatagATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT
EST: gi|149085475|gb|EE174981.2|EE174981
EST:     TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAG                         ATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT
genomic: TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAGgtactggtta ... atctgtatagATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT
EST: gi|76289583|gb|DV029151.1|DV029151
EST:     TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAG                         ATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT
genomic: TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAGgtactggtta ... atctgtatagATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT
EST: gi|91872387|gb|EB402344.1|EB402344
EST:     TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAG                         ATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT
genomic: TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAGgtactggtta ... atctgtatagATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT
EST: gi|22542240|gb|BU092678.1|BU092678
EST:     TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAG                         ATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT
genomic: TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAGgtactggtta ... atctgtatagATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT
EST: gi|211362664|gb|FL128442.1|FL128442
EST:     TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAG                         ATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT
genomic: TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAGgtactggtta ... atctgtatagATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT
EST: gi|32929643|gb|CF034455.1|CF034455
EST:     TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAG                         ATTGTGACACTTTGGTA
genomic: TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAGgtactggtta ... atctgtatagATTGTGACCCTTTGGTA
EST: gi|32928347|gb|CF033159.1|CF033159
EST:     TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAG                         ATTGTGACACTTTGGTA
genomic: TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAGgtactggtta ... atctgtatagATTGTGACCCTTTGGTA
EST: gi|149110996|gb|EE294495.2|EE294495
EST:     TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAG                         ATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT
genomic: TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAGgtactggtta ... atctgtatagATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT
EST: gi|76294289|gb|DV033857.1|DV033857
EST:     TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAG                         ATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT
genomic: TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAGgtactggtta ... atctgtatagATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT
EST: gi|71313277|gb|DR793172.1|DR793172
EST:     TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAG                         ATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT
genomic: TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAGgtactggtta ... atctgtatagATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT
EST: gi|71431609|gb|DR812659.1|DR812659
EST:     TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAG                         ATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT
genomic: TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAGgtactggtta ... atctgtatagATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT