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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTGGAATAAGAAgtaagtgtttcatactccatgagtggatggatgttagataagtcttccatgtttctccctcacattcgtgcatatatcttttgttatgtttcctacccta...

Basic information

species Zea mays
transcript GRMZM2G484880_T05
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211058544|gb|FK994409.1|FK994409
EST:     TCCATTATCTCGGTTGGAATAAGAA                         CTGGGATGAATGGGTTGCAAATGACCGCTTGTTGGAATTGACGGAGGAAAA
genomic: TCCATTATCTCGGTTGGAATAAGAAgtaagtgttt ... gtttttgtagCTGGGATGAATGGGTTGCAAATGACCGCTTGTTGGAATTGACGGAGGAAAA
EST: gi|211061512|gb|FK994428.1|FK994428
EST:     TCCATTATCTCGGTTGGAATAAGAA                         CTGGGATGAATGGGTTGCAAATGACCGCTTGTTGGAATTGACGGAGGAAAA
genomic: TCCATTATCTCGGTTGGAATAAGAAgtaagtgttt ... gtttttgtagCTGGGATGAATGGGTTGCAAATGACCGCTTGTTGGAATTGACGGAGGAAAA
EST: gi|211058550|gb|FK994415.1|FK994415
EST:     TCCATTATCTCGGTTGGAATAAGAA                         CTGGGATGAATGGGTTGCAAATGACCGCTTGTTGGAATTGACGGAGGAAAA
genomic: TCCATTATCTCGGTTGGAATAAGAAgtaagtgttt ... gtttttgtagCTGGGATGAATGGGTTGCAAATGACCGCTTGTTGGAATTGACGGAGGAAAA
EST: gi|211058547|gb|FK994412.1|FK994412
EST:     TCCATTATCTCGGTTGGAATAAGAA                         CTGGGATGAATGGGTTGCAAATGACCGCTTGTTGGAATTGACGGAGGAAAA
genomic: TCCATTATCTCGGTTGGAATAAGAAgtaagtgttt ... gtttttgtagCTGGGATGAATGGGTTGCAAATGACCGCTTGTTGGAATTGACGGAGGAAAA
EST: gi|211061507|gb|FK994423.1|FK994423
EST:     TCCATTATCTCGGTTGGAATAAGAA                         CTGGGATGAATGGGTTGCAAATGACCGCTTGTTGGAATTGACGGAGGAAAA
genomic: TCCATTATCTCGGTTGGAATAAGAAgtaagtgttt ... gtttttgtagCTGGGATGAATGGGTTGCAAATGACCGCTTGTTGGAATTGACGGAGGAAAA
EST: gi|211061514|gb|FK994430.1|FK994430
EST:     TCCATTATCTCGGTTGGAATAAGAA                         CTGGGATGAATGGGTTGCAAATGACCGCTTGTTGGAATTGACGGAGGAAAA
genomic: TCCATTATCTCGGTTGGAATAAGAAgtaagtgttt ... gtttttgtagCTGGGATGAATGGGTTGCAAATGACCGCTTGTTGGAATTGACGGAGGAAAA
EST: gi|211058549|gb|FK994414.1|FK994414
EST:     TCCATTATCTCGGTTGGAATAAGAA                         CTGGGATGAATGGGTTGCAAATGACCGCTTGTTGGAATTGACGGAGGAAAA
genomic: TCCATTATCTCGGTTGGAATAAGAAgtaagtgttt ... gtttttgtagCTGGGATGAATGGGTTGCAAATGACCGCTTGTTGGAATTGACGGAGGAAAA
EST: gi|211058545|gb|FK994410.1|FK994410
EST:     TCCATTATCTCGGTTGGAATAAGAA                         CTGGGATGAATGGGTTGCAAATGACCGCTTGTTGGAATTGACGGAGGAAAA
genomic: TCCATTATCTCGGTTGGAATAAGAAgtaagtgttt ... gtttttgtagCTGGGATGAATGGGTTGCAAATGACCGCTTGTTGGAATTGACGGAGGAAAA
EST: gi|93284203|gb|EB676467.1|EB676467
EST:     TCCATTATCTCGGTTGGAATAAGAA                         CTGGGATGAATGGGTTGCAAATGACCGCTTGTTGGAATTGACGGAGGAAAA
genomic: TCCATTATCTCGGTTGGAATAAGAAgtaagtgttt ... gtttttgtagCTGGGATGAATGGGTTGCAAATGACCGCTTGTTGGAATTGACGGAGGAAAA
EST: gi|211058554|gb|FK994419.1|FK994419
EST:     TCCATTATCTCGGTTGGAATAAGAA                         CTGGGATGAATGGGTTGCAAATGACCGCTTGTTGGAATTGACGGAGGAAAA
genomic: TCCATTATCTCGGTTGGAATAAGAAgtaagtgttt ... gtttttgtagCTGGGATGAATGGGTTGCAAATGACCGCTTGTTGGAATTGACGGAGGAAAA
EST: gi|13178287|gb|BG349545.1|BG349545
EST:     TCCATTATCTCGGTTGGAATAAGAA                         CTGGGATGAATGGGTTGCAAATGACCGCTTGTTGGAATTGACGGAGGAAAA
genomic: TCCATTATCTCGGTTGGAATAAGAAgtaagtgttt ... gtttttgtagCTGGGATGAATGGGTTGCAAATGACCGCTTGTTGGAATTGACGGAGGAAAA
EST: gi|211061508|gb|FK994424.1|FK994424
EST:     TCCATTATCTCGGTTGGAATAAGAA                         CTGGGATGAATGGGTTGCAAATGACCGCTTGTTGGAATTGACGGAGGAAAA
genomic: TCCATTATCTCGGTTGGAATAAGAAgtaagtgttt ... gtttttgtagCTGGGATGAATGGGTTGCAAATGACCGCTTGTTGGAATTGACGGAGGAAAA
EST: gi|211061515|gb|FK994431.1|FK994431
EST:     TCCATTATCTCGGTTGGAATAAGAA                         CTGGGATGAATGGGTTGCAAATGACCGCTTGTTGGAATTGACGGAGGAAAA
genomic: TCCATTATCTCGGTTGGAATAAGAAgtaagtgttt ... gtttttgtagCTGGGATGAATGGGTTGCAAATGACCGCTTGTTGGAATTGACGGAGGAAAA
EST: gi|31997934|gb|CD661839.1|CD661839
EST:     TCCATTATCTCGGTTGGAATAAGAA                         CTGGGATGAATGGGTTGCAAATGACCGCTTGTTGGAATTGACGGAGGAAAA
genomic: TCCATTATCTCGGTTGGAATAAGAAgtaagtgttt ... gtttttgtagCTGGGATGAATGGGTTGCAAATGACCGCTTGTTGGAATTGACGGAGGAAAA
EST: gi|211058555|gb|FK994420.1|FK994420
EST:     TCCATTATCTCGGTTGGAATAAGAA                         CTGGGATGAATGGGTTGCAAATGACCGCTTGTTGGAATTGACGGAGGAAAA
genomic: TCCATTATCTCGGTTGGAATAAGAAgtaagtgttt ... gtttttgtagCTGGGATGAATGGGTTGCAAATGACCGCTTGTTGGAATTGACGGAGGAAAA
EST: gi|211061509|gb|FK994425.1|FK994425
EST:     TCCATTATCTCGGTTGGAATAAGAA                         CTGGGATGAATGGGTTGCAAATGACCGCTTGTTGGAATTGACGGAGGAAAA
genomic: TCCATTATCTCGGTTGGAATAAGAAgtaagtgttt ... gtttttgtagCTGGGATGAATGGGTTGCAAATGACCGCTTGTTGGAATTGACGGAGGAAAA
EST: gi|211058548|gb|FK994413.1|FK994413
EST:     TCCATTATCTCGGTTGGAATAAGAA                         CTGGGATGAATGGGTTGCAAATGACCGCTTGTTGGAATTGACGGAGGAAAA
genomic: TCCATTATCTCGGTTGGAATAAGAAgtaagtgttt ... gtttttgtagCTGGGATGAATGGGTTGCAAATGACCGCTTGTTGGAATTGACGGAGGAAAA