1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
ATAAATGTGAGGTATAAGCTTGTTTCCGGCTCTCCTTCTGGTGTTGTAGCTGCTGAGTGCAAGCAAGCACAGGCAAGCTGGGTTGTGCTAGACAAgtatggtcaactgctaaatcagtagtttcttgaatacatcctacgttctttcattgttatttttgcttaataaattttatgttgctgctgctgctgctcag
species | Zea mays |
transcript | GRMZM2G480607_T06 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AAGCACAGGCAAGCTGGGTTGTGCTAGACAA GGATTTGAAGCATGAGGAGAAGCGTTGTGTGGAGGAGCTTCAGTGCAACATEST: gi|211362238|gb|FK992226.1|FK992226
genomic: AAGCACAGGCAAGCTGGGTTGTGCTAGACAAgtatggtcaa ... tgctgctcagGGATTTGAAGCATGAGGAGAAGCGTTGTGTGGAGGAGCTTCAGTGCAACAT
EST: AAGCACAGGCAAGCTGGGTTGTGCTAGACAA GGATTTGAAGCATGAGGAGAAGCGTTGTGTGGAGGAGCTTCAGTGCAACATEST: gi|211364886|gb|FK992235.1|FK992235
genomic: AAGCACAGGCAAGCTGGGTTGTGCTAGACAAgtatggtcaa ... tgctgctcagGGATTTGAAGCATGAGGAGAAGCGTTGTGTGGAGGAGCTTCAGTGCAACAT
EST: AAGCACAGGCAAGCTGGGTTGTGCTAGACAA GGATTTGAAGCATGAGGAGAAGCGTTGTGTGGAGGAGCTTCAGTGCAACATEST: gi|211362237|gb|FK992225.1|FK992225
genomic: AAGCACAGGCAAGCTGGGTTGTGCTAGACAAgtatggtcaa ... tgctgctcagGGATTTGAAGCATGAGGAGAAGCGTTGTGTGGAGGAGCTTCAGTGCAACAT
EST: TTGTGCTAGACAA GGATTTGAAGCATGAGGAGAAGCGTTGTGTGGAGGAGCTTCAGTGCAACATEST: gi|211364889|gb|FK992238.1|FK992238
genomic: TTGTGCTAGACAAgtatggtcaa ... tgctgctcagGGATTTGAAGCATGAGGAGAAGCGTTGTGTGGAGGAGCTTCAGTGCAACAT
EST: AAGCACAGGCAAGCTGGGTTGTGCTAGACAA GGATTTGAAGCATGAGGAGAAGCGTTGTGTGGAGGAGCTTCAGTGCAACATEST: gi|211174473|gb|FL037929.1|FL037929
genomic: AAGCACAGGCAAGCTGGGTTGTGCTAGACAAgtatggtcaa ... tgctgctcagGGATTTGAAGCATGAGGAGAAGCGTTGTGTGGAGGAGCTTCAGTGCAACAT
EST: GTAGCTGCTGAGTGCAAGCAAGCACAGGCAAGCTGGGTTGTGCTAGACAA GGATTTGAAGCATGAGGAGAAGCGTTGTGTGGAGGAGCTTCAGTGCAACATEST: gi|211364885|gb|FK992234.1|FK992234
genomic: GTAGCTGCTGAGTGCAAGCAAGCACAGGCAAGCTGGGTTGTGCTAGACAAgtatggtcaa ... tgctgctcagGGATTTGAAGCATGAGGAGAAGCGTTGTGTGGAGGAGCTTCAGTGCAACAT
EST: AAGCACAGGCAAGCTGGGTTGTGCTAGACAA GGATTTGAAGCATGAGGAGAAGCGTTGTGTGGAGGAGCTTCAGTGCAACATEST: gi|211364887|gb|FK992236.1|FK992236
genomic: AAGCACAGGCAAGCTGGGTTGTGCTAGACAAgtatggtcaa ... tgctgctcagGGATTTGAAGCATGAGGAGAAGCGTTGTGTGGAGGAGCTTCAGTGCAACAT
EST: AAGCACAGGCAAGCTGGGTTGTGCTAGACAA GGATTTGAAGCATGAGGAGAAGCGTTGTGTGGAGGAGCTTCAGTGCAACATEST: gi|211362242|gb|FK992230.1|FK992230
genomic: AAGCACAGGCAAGCTGGGTTGTGCTAGACAAgtatggtcaa ... tgctgctcagGGATTTGAAGCATGAGGAGAAGCGTTGTGTGGAGGAGCTTCAGTGCAACAT
EST: AGCACAGGCAAGCTGGGTTGTGCTAGACAA GGATTTGAAGCATGAGGAGAAGCGTTGTGTGGAGGAGCTTCAGTGCAACATEST: gi|211364884|gb|FK992233.1|FK992233
genomic: AGCACAGGCAAGCTGGGTTGTGCTAGACAAgtatggtcaa ... tgctgctcagGGATTTGAAGCATGAGGAGAAGCGTTGTGTGGAGGAGCTTCAGTGCAACAT
EST: AAGCACAGGCAAGCTGGGTTGTGCTAGACAA GGATTTGAAGCATGAGGAGAAGCGTTGTGTGGAGGAGCTTCAGTGCAACATEST: gi|211362243|gb|FK992231.1|FK992231
genomic: AAGCACAGGCAAGCTGGGTTGTGCTAGACAAgtatggtcaa ... tgctgctcagGGATTTGAAGCATGAGGAGAAGCGTTGTGTGGAGGAGCTTCAGTGCAACAT
EST: AAGCACAGGCAAGCTGGGTTGTGCTAGACAA GGATTTGAAGCATGAGGAGAAGCGTTGTGTGGAGGAGCTTCAGTGCAACATEST: gi|211096511|gb|FL457291.1|FL457291
genomic: AAGCACAGGCAAGCTGGGTTGTGCTAGACAAgtatggtcaa ... tgctgctcagGGATTTGAAGCATGAGGAGAAGCGTTGTGTGGAGGAGCTTCAGTGCAACAT
EST: GTAGCTGCTGAGTGCAAGCAAGCACAGGCAAGCTGGGTTGTGCTAGACAA GGATTTGAAGCATGAGGAGAAGCGTTGTGTGGAGGAGCTTCAGTGCAACATEST: gi|211364888|gb|FK992237.1|FK992237
genomic: GTAGCTGCTGAGTGCAAGCAAGCACAGGCAAGCTGGGTTGTGCTAGACAAgtatggtcaa ... tgctgctcagGGATTTGAAGCATGAGGAGAAGCGTTGTGTGGAGGAGCTTCAGTGCAACAT
EST: AAGCACAGGCAAGCTGGGTTGTGCTAGACAA GGATTTGAAGCATGAGGAGAAGCGTTGTGTGGAGGAGCTTCAGTGCAACATEST: gi|28987432|gb|CB351631.1|CB351631
genomic: AAGCACAGGCAAGCTGGGTTGTGCTAGACAAgtatggtcaa ... tgctgctcagGGATTTGAAGCATGAGGAGAAGCGTTGTGTGGAGGAGCTTCAGTGCAACAT
EST: GTAGCTGCTGAGTGCAAGCAAGCACAGGCAAGCTGGGTTGTGCTAGACAA GGATTTGAAGCATGAGGAGAAGCGTTGTGTGGAGGAGCTTCAGTGCAACATEST: gi|67016374|gb|CO445123.1|CO445123
genomic: GTAGCTGCTGAGTGCAAGCAAGCACAGGCAAGCTGGGTTGTGCTAGACAAgtatggtcaa ... tgctgctcagGGATTTGAAGCATGAGGAGAAGCGTTGTGTGGAGGAGCTTCAGTGCAACAT
EST: GTAGCTGCTGAGTGCAAGCAAGCACAGGCAAGCTGGGTTGTGCTAGACAA GGATTTGAAGCATGAGGAGAAGCGTTGTGTGGAGGAGCTTCAGTGCAACATEST: gi|211362236|gb|FK992224.1|FK992224
genomic: GTAGCTGCTGAGTGCAAGCAAGCACAGGCAAGCTGGGTTGTGCTAGACAAgtatggtcaa ... tgctgctcagGGATTTGAAGCATGAGGAGAAGCGTTGTGTGGAGGAGCTTCAGTGCAACAT
EST: AAGCACAGGCAAGCTGGGTTGTGCTAGACAA GGATTTGAAGCATGAGGAGAAGCGTTGTGTGGAGGAGCTTCAGTGCAACATEST: gi|211174474|gb|FL037930.1|FL037930
genomic: AAGCACAGGCAAGCTGGGTTGTGCTAGACAAgtatggtcaa ... tgctgctcagGGATTTGAAGCATGAGGAGAAGCGTTGTGTGGAGGAGCTTCAGTGCAACAT
EST: GTAGCTGCTGAGTGCAAGCAAGCACAGGCAAGCTGGGTTGTGCTAGACAA GGATTTGAAGCATGAGGAGAAGCGTTGTGTGGAGGAGCTTCAGTGCAACATEST: gi|211362241|gb|FK992229.1|FK992229
genomic: GTAGCTGCTGAGTGCAAGCAAGCACAGGCAAGCTGGGTTGTGCTAGACAAgtatggtcaa ... tgctgctcagGGATTTGAAGCATGAGGAGAAGCGTTGTGTGGAGGAGCTTCAGTGCAACAT
EST: AAGCACAGGCAAGCTGGGTTGTGCTAGACAA GGATTTGAAGCATGAGGAGAAGCGTTGTGTGGAGGAGCTTCAGTGCAACAT
genomic: AAGCACAGGCAAGCTGGGTTGTGCTAGACAAgtatggtcaa ... tgctgctcagGGATTTGAAGCATGAGGAGAAGCGTTGTGTGGAGGAGCTTCAGTGCAACAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATAAATGTGAGGTATAAGCTTGTTTCCGGCTCTCCTTCTGGTGTTGTAGCTGCTGAGTGCAAGCAAGCACAGGCAAGCTGGGTTGTGCTAGACAAgtatggtcaactgctaaatcagtagtttcttgaatacatcctacgttctttcattgttatttttgcttaataaattttatgttgctgctgctgctgctcag
- - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG