1 5' 3' | 2 5' 3' | 3 5' 3' |
GCAAGCCTCCTGCAGCAACTCTTCAGCTGGTGACACTAACCACCGCAGATTTAGAAGCAGTGGAAGCACGAGTGATTCATGGAAGGAAGTTTCCGAAGAGgttgtaatctaccaacactatgccaattcactctgcccaaacctttgagcatgccgcactgcctttctaattcactttttttgttggcag
species | Zea mays |
transcript | GRMZM2G474769_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTAGAAGCAGTGGAAGCACGAGTGATTCATGGAAGGAAGTTTCCGAAGAG GGTCGTCTGGCTTTCCATGCGCTGTTCAGTAGAGAAAAGCTTCCGCAAAGCEST: gi|78180850|gb|DV551223.1|DV551223
genomic: TTAGAAGCAGTGGAAGCACGAGTGATTCATGGAAGGAAGTTTCCGAAGAGgttgtaatct ... ttgttggcagGGTCGTCTGGCTTTCCATGCGCTGTTCAGTAGAGAAAAGCTTCCGCAAAGC
EST: TTAGAAGCAGTGGAAGCACAAGTGATTCATGGAAGGAAGTTTCCGAAGAG GGTCGTCTGGCTTTCCATGCGCTGTTCAGTAGAGAAAAGCTTCCGCAAAGCEST: gi|8577344|gb|BE129981.1|BE129981
genomic: TTAGAAGCAGTGGAAGCACGAGTGATTCATGGAAGGAAGTTTCCGAAGAGgttgtaatct ... ttgttggcagGGTCGTCTGGCTTTCCATGCGCTGTTCAGTAGAGAAAAGCTTCCGCAAAGC
EST: TTAGAAGCAGTGGAAGCACAAGTGATTCATGGAAGGAAGTTTCCGAAGAG GGTCGTCTGGCTTTCCATGCGCTGTTCAGTAGAGAAAAGCTTCCGCAAAGCEST: gi|60358102|gb|DN225075.1|DN225075
genomic: TTAGAAGCAGTGGAAGCACGAGTGATTCATGGAAGGAAGTTTCCGAAGAGgttgtaatct ... ttgttggcagGGTCGTCTGGCTTTCCATGCGCTGTTCAGTAGAGAAAAGCTTCCGCAAAGC
EST: TAGAAGCAGTGGAAGCACGAGTGATTCATGGAAGGAAGTTTCCGAAGAG GGTCGTCTGGCTTTCCATGCGCTGTTCAGTAGAGAAAAGCTTCCGCAAAGC
genomic: TAGAAGCAGTGGAAGCACGAGTGATTCATGGAAGGAAGTTTCCGAAGAGgttgtaatct ... ttgttggcagGGTCGTCTGGCTTTCCATGCGCTGTTCAGTAGAGAAAAGCTTCCGCAAAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAAGCCTCCTGCAGCAACTCTTCAGCTGGTGACACTAACCACCGCAGATTTAGAAGCAGTGGAAGCACGAGTGATTCATGGAAGGAAGTTTCCGAAGAGgttgtaatctaccaacactatgccaattcactctgcccaaacctttgagcatgccgcactgcctttctaattcactttttttgttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA