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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCCAAACTCCAAGCACCTTGGGACCACGGTCTGGGATGCATCAATGGTGTTTGTCAAGTTCTTGgtaattggtttgggttctaggcctccctagtccctacacaagttgatgtttcaaatcttgaaatttcttactcgtactaggatttgcttctaaggaaaatgctcgtacttttatcaccgtcatcatgatcgtcatttcacggttgatctgtacag

Basic information

species Zea mays
transcript GRMZM2G471805_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G471805_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g57330.1 (Oryza sativa), 5'ss of exon 3
GATCCAAACTCCAAGCACCTTGGGACCACGGTCTGGGATGCATCAATGGTGTTTGTCAAGTTCTTGgtaattggtttgggttctaggcctccctagtc--cctacacaagttgatgtttcaaatcttgaaatttcttactcgtactaggatttgcttctaag-gaaaatgctcgtacttttatcaccgtcatcatgatcgtcatttcacggttgatctgtacag
||||| ||||| |||||||| || |||||||||||||||||||| |||||||| |||||||||||||||||   ||    |  | || || |  ||    |||  ||||||||| |   || ||    |||| |  || || | | |     ||   |||   |   ||||||                                                   
GATCCTAACTCGAAGCACCTCGGAACCACGGTCTGGGATGCATCCATGGTGTTCGTCAAGTTCTTGgtaatctcttc---tctttggactactgagctatcctgtacaagttgaag---cagat----aaatgtgataatcatgcaaattgctggaactattcggtgatgctccct------------------------------------------------

upper sequence: GRMZM2G471805_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA12G08490.1 (Glycine max), 5'ss of exon 4
GATCCAAACTCCAAGCACCTTGGGACCACGGTCTGGGATGCATCAATGGTGTTTGTCAAGTTCTTGgtaattggtttgggttctaggcctccctagtccctaca--caagttgatgtttcaaatcttgaaatttcttactcgtactaggatttgcttctaaggaaaatgctcgtacttttatcaccgtcatcatgatcgtcatttcacggttgatctgtacag
||||| || ||||||||| | ||||| || || |||||||||||| | ||||||||||||||  | ||||   || ||      |      | |  ||   |    |  |||  | |||  |    ||  |    ||| | |  |     | |  || || | ||                                                          
GATCCCAATTCCAAGCACTTAGGGACTACAGTATGGGATGCATCACTTGTGTTTGTCAAGTTTCTTgtaagctgtgtgctcctcacaatcacatgctctggaatgtcctgttactcttttcatgaatgcgaaagtttattagaccctaagtgtatttttacgtaac---------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60395803|gb|DN228673.1|DN228673
EST:     ACCTTGGGACCACGGTCTGGGATGCATCAATGGTGTTTGTCAAGTTCTTG                         GAAAAGAATAGCAGAAAAGGTCGGTTTTGTCCATCCAAGCTAAAAGGAAAG
genomic: ACCTTGGGACCACGGTCTGGGATGCATCAATGGTGTTTGTCAAGTTCTTGgtaattggtt ... atctgtacagGAAAAGAATAGCAGAAAAGGTCGGTTTTGTCCATCCAAGCTAAAAGGAAAG
EST: gi|211167619|gb|FL375013.1|FL375013
EST:     ACCTTGGGACCACGGTCTGGGATGCATCAATGGTGTTTGTCAAGTTCTTG                         GAAAAGAATAGCAGAAAAGGTCGGTTTTGTCCATCCAAGCTAAAAGGAAAG
genomic: ACCTTGGGACCACGGTCTGGGATGCATCAATGGTGTTTGTCAAGTTCTTGgtaattggtt ... atctgtacagGAAAAGAATAGCAGAAAAGGTCGGTTTTGTCCATCCAAGCTAAAAGGAAAG
EST: gi|211178303|gb|FL423187.1|FL423187
EST:     ACCTTGGGACCACGGTCTGGGATGCATCAATGGTGTTTGTCAAGTTCTTG                         GAAAAGAATAGCAGAAAAGGTCGGTTTTGTCCATCCAAGCTAAAAGGAAAG
genomic: ACCTTGGGACCACGGTCTGGGATGCATCAATGGTGTTTGTCAAGTTCTTGgtaattggtt ... atctgtacagGAAAAGAATAGCAGAAAAGGTCGGTTTTGTCCATCCAAGCTAAAAGGAAAG
EST: gi|211209107|gb|FL370009.1|FL370009
EST:     ACCTTGGGACCACGGTCTGGGATGCATCAATGGTGTTTGTCAAGTTCTTG                         GAAAAGAATAGCAGAAAAGGTCGGTTTTGTCCATCCAAGCTAAAAGGAAAG
genomic: ACCTTGGGACCACGGTCTGGGATGCATCAATGGTGTTTGTCAAGTTCTTGgtaattggtt ... atctgtacagGAAAAGAATAGCAGAAAAGGTCGGTTTTGTCCATCCAAGCTAAAAGGAAAG
EST: gi|211219619|gb|FL402178.1|FL402178
EST:     ACCTTGGGACCACGGTCTGGGATGCATCAATGGTGTTTGTCAAGTTCTTG                         GAAAAGAATAGCAGAAAAGGTCGGTTTTGTCCATCCAAGCTAAAAGGAAAG
genomic: ACCTTGGGACCACGGTCTGGGATGCATCAATGGTGTTTGTCAAGTTCTTGgtaattggtt ... atctgtacagGAAAAGAATAGCAGAAAAGGTCGGTTTTGTCCATCCAAGCTAAAAGGAAAG
EST: gi|211442064|gb|FL421101.1|FL421101
EST:     ACCTTGGGACCACGGTCTGGGATGCATCAATGGTGTTTGTCAAGTTCTTG                         GAAAAGAATAGCAGAAAAGGTCGGTTTTGTCCATCCAAGCTAAAAGGAAAG
genomic: ACCTTGGGACCACGGTCTGGGATGCATCAATGGTGTTTGTCAAGTTCTTGgtaattggtt ... atctgtacagGAAAAGAATAGCAGAAAAGGTCGGTTTTGTCCATCCAAGCTAAAAGGAAAG
EST: gi|20301099|gb|BQ164042.1|BQ164042
EST:     ACCTTGGGACCACGGTCTGGGATGCATCAATGGTGTTTGTCAAGTTCTTG                         GAAAAGAATAGCAGAAAAGGTCGGTTTTGTCCATCCAAGCTAAAAGGAAAG
genomic: ACCTTGGGACCACGGTCTGGGATGCATCAATGGTGTTTGTCAAGTTCTTGgtaattggtt ... atctgtacagGAAAAGAATAGCAGAAAAGGTCGGTTTTGTCCATCCAAGCTAAAAGGAAAG