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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGGATTACCATTACGAGCCAAAGgtagacccaaacagccgaaaatctttagcctgcctgcgtgcgtgcctgcctgcatgttttaactgaaagatttgcacattttttgggggtatatacatacattcag

Basic information

species Zea mays
transcript GRMZM2G470499_T05
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78090030|gb|DV518404.1|DV518404
EST:     GTGACATCAAAGCGGCGAACATCCTTCTGGATTACCATTACGAGCCAAAG                         GTTGCAGATTTCGGGTTGGCCAAATACCAAGCAGCTGAAGTCACCCCTGTT
genomic: GTGACATCAAAGCGGCGAACATCCTTCTGGATTACCATTACGAGCCAAAGgtagacccaa ... atacattcagGTTGCAGATTTCGGGTTGGCCAAATACCAAGCAGCTGAAGTCACCCCTGTT
EST: gi|101401541|gb|EB822450.1|EB822450
EST:     TGACATCAAAGCGGCGAACATCCTTCTGGATTACCATTACGAAGCCAA-G                         GTTGCAGATTTC
genomic: TGACATCAAAGCGGCGAACATCCTTCTGGATTACCATTACGA-GCCAAAGgtagacccaa ... atacattcagGTTGCAGATTTC
EST: gi|71315889|gb|DR794631.1|DR794631
EST:     GTGACATCAAAGCGGCGAACATCCTTCTGGATTACCATTACGAGCCAAAG                         GTTGCAGATTTCGGGTTGGCCAAATACCAAGCAGCTGAAGTCACCCCTGTT
genomic: GTGACATCAAAGCGGCGAACATCCTTCTGGATTACCATTACGAGCCAAAGgtagacccaa ... atacattcagGTTGCAGATTTCGGGTTGGCCAAATACCAAGCAGCTGAAGTCACCCCTGTT
EST: gi|71430040|gb|DR811090.1|DR811090
EST:     GTGACATCAAAGCGGCGAACATCCTTCTGGATTACCATTACGAGCCAAAG                         GTTGCAGATTTCGGGTTGGCCAAATACCAAGCAGCTGAAGTCACCCCTGTT
genomic: GTGACATCAAAGCGGCGAACATCCTTCTGGATTACCATTACGAGCCAAAGgtagacccaa ... atacattcagGTTGCAGATTTCGGGTTGGCCAAATACCAAGCAGCTGAAGTCACCCCTGTT
EST: gi|149012054|gb|EE042472.2|EE042472
EST:     GTGACATCAAAGCGGCGAACATCCTTCTGGATTACCATTACGAGCCAAAG                         GTTGCAGATTTCGGGTTGGCCAAATACCAAGCAGCTGAAGTCACCCCTGTT
genomic: GTGACATCAAAGCGGCGAACATCCTTCTGGATTACCATTACGAGCCAAAGgtagacccaa ... atacattcagGTTGCAGATTTCGGGTTGGCCAAATACCAAGCAGCTGAAGTCACCCCTGTT