1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AAAAATTATCTGGATGTTTACCGCTTTGACTCATGGGGTGGAACGTTACTTCCAACATACAACATTGGGCAGCAGgtttgctgtagttatatttcacactgcacattttttttggttaagtcattttcttactaagattttattgtgcatgacggttaacaaaaactggttaaag...
species | Zea mays |
transcript | GRMZM2G470438_T04 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGACTCATGGGGTGGAACGTTACTTCCAACATACAACATTGGGCAGCAG TTTGTTCCGACAACTTTAACACTTGATTCTGGAGTGACTCGGCCACCGCCTEST: gi|149060846|gb|EE157300.2|EE157300
genomic: TTGACTCATGGGGTGGAACGTTACTTCCAACATACAACATTGGGCAGCAGgtttgctgta ... aatcatgcagTTTGTTCCGACAACTTTAACACTTGATTCTGGAGTGACTCGGCCACCGCCT
EST: TTGACTCATGGGGTGGAACGTTACTTCCAACATACAACATTGGGCAGCAG TTTGTTCCGACAACTTTAACACTTGATTCTGGAGTGACTCGGCCACCGCCTEST: gi|71327908|gb|DR800590.1|DR800590
genomic: TTGACTCATGGGGTGGAACGTTACTTCCAACATACAACATTGGGCAGCAGgtttgctgta ... aatcatgcagTTTGTTCCGACAACTTTAACACTTGATTCTGGAGTGACTCGGCCACCGCCT
EST: TTGACTCATGGGGTGGAACGTTACTTCCAACATACAACATTGGGCAGCAG TTTGTTCCGACAACTTTAACACTTGATTCTGGAGTGACTCGGCCACCGCCT
genomic: TTGACTCATGGGGTGGAACGTTACTTCCAACATACAACATTGGGCAGCAGgtttgctgta ... aatcatgcagTTTGTTCCGACAACTTTAACACTTGATTCTGGAGTGACTCGGCCACCGCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAAATTATCTGGATGTTTACCGCTTTGACTCATGGGGTGGAACGTTACTTCCAACATACAACATTGGGCAGCAGgtttgctgtagttatatttcacactgcacattttttttggttaagtcattttcttactaagattttattgtgcatgacggttaacaaaaactggttaaag
- - - - - - - - - - - - - - - - - - GGTGGA