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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACGTGACCGAGGCGCTGCTGCCCCTGCTCCTGCAGGCCTCCTCCTCCGGCGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGCGTAAgtaagctgttccggtatctgatcataccgtttcagattccgttcctttccttcgaccaacgccagcagctgctgctgctggatctgaaacaaag

Basic information

species Zea mays
transcript GRMZM2G468855_T03
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71760118|gb|DR958055.1|DR958055
EST:     CGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGC-TA-                         --T-C--T--C--AGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGA
genomic: CGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGCGTAAgtaagctgtt ... tgaaacaaagAATGCAGTATCTCAGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGA
EST: gi|71307392|gb|DR789895.1|DR789895
EST:     CGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGC-TA-                         --T-C--T--C--AGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGA
genomic: CGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGCGTAAgtaagctgtt ... tgaaacaaagAATGCAGTATCTCAGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGA
EST: gi|89761516|gb|DY689501.1|DY689501
EST:     CGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGC-TA-                         --T-C--T--C--AGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGA
genomic: CGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGCGTAAgtaagctgtt ... tgaaacaaagAATGCAGTATCTCAGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGA
EST: gi|91052468|gb|EB162886.1|EB162886
EST:     CGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGC-TA-                         --T-C--T--C--AGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGA
genomic: CGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGCGTAAgtaagctgtt ... tgaaacaaagAATGCAGTATCTCAGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGA
EST: gi|78083622|gb|DV512015.1|DV512015
EST:     GGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTA--C----                         ---GC--TATCTCAGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGA
genomic: GGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGCGTAAgtaagctgtt ... tgaaacaaagAATGCAGTATCTCAGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGA
EST: gi|71433713|gb|DR814763.1|DR814763
EST:     CGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTA--C----                         ---GC--TATCTCAGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGA
genomic: CGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGCGTAAgtaagctgtt ... tgaaacaaagAATGCAGTATCTCAGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGA
EST: gi|71439323|gb|DR820373.1|DR820373
EST:     CGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGC-TA-                         --T-C--T--C--AGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGA
genomic: CGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGCGTAAgtaagctgtt ... tgaaacaaagAATGCAGTATCTCAGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGA
EST: gi|93284169|gb|EB676433.1|EB676433
EST:     CGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTA--C----                         ---GC--TATCTCAGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGA
genomic: CGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGCGTAAgtaagctgtt ... tgaaacaaagAATGCAGTATCTCAGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGA
EST: gi|71419697|gb|DR804867.1|DR804867
EST:     CGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGC-TA-                         --T-C--T--C--AGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGA
genomic: CGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGCGTAAgtaagctgtt ... tgaaacaaagAATGCAGTATCTCAGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGA
EST: gi|149082993|gb|EE172232.2|EE172232
EST:     CGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGCGTAA                         AATGCAGTATCTCAGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGA
genomic: CGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGCGTAAgtaagctgtt ... tgaaacaaagAATGCAGTATCTCAGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGA
EST: gi|148947888|gb|EC893382.2|EC893382
EST:     CGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGC-TA-                         --T-C--T--C--AGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGA
genomic: CGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGCGTAAgtaagctgtt ... tgaaacaaagAATGCAGTATCTCAGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AACGTGACCGAGGCGCTGCTGCCCCTGCTCCTGCAGGCCTCCTCCTCCGGCGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGCGTAAgtaagctgttccggtatctgatcataccgtttcagattccgttcctttccttcgaccaacgccagcagctgctgctgctggatctgaaacaaag

- - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT