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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTTCTGGGAGACTGGCATTCTTGGTCAAGTGCTTTACCTTGAGGCCCATGCTATTGGAATATCTGCCACAGGAATCGGATGCTACTTTGATGATACTGgtaagttgagttaccattttaatagctcaatcatagttttgtaatttgttggttaatcatagaggtattgtttttaatcagcaatcgtcttctagtaaca...

Basic information

species Zea mays
transcript GRMZM2G467466_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G467466_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os10g11340.1 (Oryza sativa), 5'ss of exon 2
TTGTTCTGGGAGACTGGCATTCTTGGTCAAGTGCTTTACCTTGAGGCCCATGCTATTGGAATATCTGCCACAGGAATCGGATGCTACTTTGATGATACTGgtaagttgagttaccattttaatagctcaatcatagttttgtaatttgttggttaatcatagaggtattgtttttaatcagcaatcgtcttctagtaaca-----
||||| |||||||||||  ||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||| || || ||||||||||||||| ||||||||| |    | ||||  | |      |    | ||||  | |||  |   ||     |     ||  |||   |||  |||   ||   | |    |     
TTGTTTTGGGAGACTGGTGTTCTTGGTCAAGTTCTTTACCTTGAGGCCCATGCTGTTGGAATATCTGCGACAGGGATTGGTTGCTACTTTGATGATGCTGgtaagtag---catcattcgagttttaacacaggaattttcaagttt--taaatagcatgaaccacatcatttgacatctacaaatttcacttcgatttatccat

upper sequence: GRMZM2G467466_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA03G03280.1 (Glycine max), 5'ss of exon 3
TTGTTCTGGGAGACTGGCATTCTTGGTCAAGTGCTTTACCTTGAGGCCCATGCTATTGGAATATCTGCCACAGGAATCGGATGCTACTTTGATGATACTGgtaagttgagttaccattttaatagctcaatcatagttttgtaatttgttggttaatcatag-aggtattgtttttaatcagcaatcgtcttcta-gtaaca
|| || |||||||||||  ||||||| || ||||| |||||||| || |||||||||||||| || || || ||||| || || | ||||||| |  | |||| | |   ||    |    || |||     | |  |||||    ||   |||| |  | | |  |||| |||||   |  |||     | | | || |  
TTATTTTGGGAGACTGGAGTTCTTGGACAGGTGCTGTACCTTGAAGCACATGCTATTGGAATCTCAGCAACTGGAATTGGTTGTTTCTTTGATAACCCCGgtatgattctttgttttcaccattgctttgaga-acatttgtccggtggcagttatttttggtaaatattttttttttgctccaagtccttgccatgttat-

upper sequence: GRMZM2G467466_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv15s0048g00430.t01 (Vitis vinifera), 5'ss of exon 2
TTGTTCTGGGAGACTGGCATTCTTGGTCAAGTGCTTTACCTTGAGGCCCATGCTATTGGAATATCTGCCACAGGAATCGGATGCTACTTTGATGATACTGgtaagttgagttaccattttaatagctcaatcatagttttgtaatttgttggttaatcatagaggtattgtttttaatcagcaatcgtcttctagtaaca----
|| || ||||| |||||  |||| ||||| ||| | |||||||| || |||||| |||| |||||||| || || || || ||||||||||||||| ||||||   ||| || |  |||    |  || ||   |  |      ||     | |||    | || || | |  | |   |   |   | | |   | ||     
TTATTTTGGGAAACTGGAGTTCTGGGTCAGGTGTTGTACCTTGAAGCACATGCTGTTGGCATATCTGCAACTGGCATTGGCTGCTACTTTGATGATGCTGgta---tgactt-ctttttctccacttccatagcatgtgcagtgttaaaccgataacacaaaagataatatactcatgtattcaatttttccagttgactccca