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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTTgtaagtaaagttttcaatacatacgaaatggtcctgtattgttcttatatatataatatatgtgcaagtttttcctttcttgatgatcatagtactacactactaataattcagaaagtttgagcattattattgcttccattctacgtgcag

Basic information

species Zea mays
transcript GRMZM2G466281_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G466281_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g02750.3 (Oryza sativa), 5'ss of exon 3
ATTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTTgtaagtaaagttttcaatacatacgaaatggtcctgtattgttcttatatatataatatatgtgcaagtttttcctttcttgatgatcatagtactacactactaataattcagaaagtttgagcattattattgcttccattctacgtgcag
|||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||     |   ||   |   || |  | |  |  | |  ||||   | |    |||    | |  |||  || || | ||||          ||  |  |||| |||||  |  |    | |||||| || | | ||| ||  |||||
ATTACACTGACAGGCTTCATGTTTCTATTGACATCGGCATTCCTTGGCTTTgtaagta-----tcttatggctgtaaatt--ttcgatgctttctttat---tgtggcctatacagaggagttttattgctcgttgat---------gcagcagaaatatttcagccaactgataccttattactgttccaattttatctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211250318|gb|FL201841.1|FL201841
EST:     TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT                         TTATATTCACCCCATCTAGATACAGCGCCCCCCAGATGGGTTCA
genomic: TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTTgtaagtaaag ... ctacgtgcagTTATATTCACCCCATCTAGATACAGCACCCCCCAGATGGGTTCA
EST: gi|101388019|gb|EB816024.1|EB816024
EST:     TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT                         TTATATTCACCCCATCTAGATACAGCACCCCCCAGATGGGTTCACCTTGCT
genomic: TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTTgtaagtaaag ... ctacgtgcagTTATATTCACCCCATCTAGATACAGCACCCCCCAGATGGGTTCACCTTGCT
EST: gi|76933447|gb|DV173462.1|DV173462
EST:     TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT                         TTATATTCACCCCATCTAGATACAGCACCCCCCAGATGGGTTCACCTTGCT
genomic: TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTTgtaagtaaag ... ctacgtgcagTTATATTCACCCCATCTAGATACAGCACCCCCCAGATGGGTTCACCTTGCT
EST: gi|78108358|gb|DV526776.1|DV526776
EST:     TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT                         TTATATTCACCCCATCTAGATACAGCACCCCCCAGATGGGTTCACCTTGCT
genomic: TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTTgtaagtaaag ... ctacgtgcagTTATATTCACCCCATCTAGATACAGCACCCCCCAGATGGGTTCACCTTGCT
EST: gi|76284393|gb|DV023961.1|DV023961
EST:     TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT                         TTATATTCACCCCATCTAGATACAGCACCCCCCAGATGGGTTCACCTTGCT
genomic: TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTTgtaagtaaag ... ctacgtgcagTTATATTCACCCCATCTAGATACAGCACCCCCCAGATGGGTTCACCTTGCT
EST: gi|211250321|gb|FL201844.1|FL201844
EST:     TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT                         TTATATTCACCCCATCTAGAT
genomic: TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTTgtaagtaaag ... ctacgtgcagTTATATTCACCCCATCTAGAT
EST: gi|148930548|gb|EE285169.2|EE285169
EST:     TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT                         TTATATTCACCCCATCTAGATACAGCACCCCCCAGATGGGTTCACCTTGCT
genomic: TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTTgtaagtaaag ... ctacgtgcagTTATATTCACCCCATCTAGATACAGCACCCCCCAGATGGGTTCACCTTGCT
EST: gi|148948015|gb|EC893516.2|EC893516
EST:     TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT                         TTATATTCACCCCATCTAGATACAGCACCCCCCAGATGGGTTCACCTTGCT
genomic: TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTTgtaagtaaag ... ctacgtgcagTTATATTCACCCCATCTAGATACAGCACCCCCCAGATGGGTTCACCTTGCT
EST: gi|211250319|gb|FL201842.1|FL201842
EST:     TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT                         TTATATTCACCCCATCTAGATACAGCACCCCCCAGATGGGTTCACCTTGCT
genomic: TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTTgtaagtaaag ... ctacgtgcagTTATATTCACCCCATCTAGATACAGCACCCCCCAGATGGGTTCACCTTGCT
EST: gi|149085392|gb|EE174899.2|EE174899
EST:     TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT                         TTATATTCACCCCATCTAGATACAGCACCCCCCAGATGGGTTCACCTTGCT
genomic: TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTTgtaagtaaag ... ctacgtgcagTTATATTCACCCCATCTAGATACAGCACCCCCCAGATGGGTTCACCTTGCT
EST: gi|88756189|gb|DY540330.1|DY540330
EST:     TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT                         TTATATTCACCCCATCTAGATACAGCACCCCCCAGATGGGTTCACCTTGCT
genomic: TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTTgtaagtaaag ... ctacgtgcagTTATATTCACCCCATCTAGATACAGCACCCCCCAGATGGGTTCACCTTGCT
EST: gi|88756155|gb|DY540296.1|DY540296
EST:     TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT                         TTATATTCACCCCATCTAGATACAGCACCCCCCAGATGGGTTCACCTTGCT
genomic: TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTTgtaagtaaag ... ctacgtgcagTTATATTCACCCCATCTAGATACAGCACCCCCCAGATGGGTTCACCTTGCT
EST: gi|211250316|gb|FL201839.1|FL201839
EST:     TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT                         TTATATTCACCCCATCTAGATACAGCACCCCCCAGATGGGTTCACCTTGCT
genomic: TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTTgtaagtaaag ... ctacgtgcagTTATATTCACCCCATCTAGATACAGCACCCCCCAGATGGGTTCACCTTGCT