1 5' 3' | 2 5' 3' | 3 5' 3' |
GCAAAGCAGGAGTGAGAAGAAGAGCCGCAAAGCCATGCTGAAGCTTGGCATGAAGCCCATCACTGGTGTCAGCCGTGTCACTGTGAAGAAAAGCAAGAATgtaattcaccacgcaaactggcctatctttattgttgtctggctaacatggtatatattatctttattgttgtctggctaacatgataaatgcacatatttttcccag
species | Zea mays |
transcript | GRMZM2G465333_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGAAGCCCATCACTGGTGTCAGCCGTGTCACTGTGAAGAAAAGCAAGAAT ATACTGTTTGTCATCTCGAAGCCAGATGTGTTCAAGAGCCCGAACTCAGACEST: gi|32936343|gb|CF041155.1|CF041155
genomic: TGAAGCCCATCACTGGTGTCAGCCGTGTCACTGTGAAGAAAAGCAAGAATgtaattcacc ... tttttcccagATACTGTTTGTCATCTCGAAGCCAGATGTGTTCAAGAGCCCGAACTCAGAC
EST: TGAAGCCCATCACTGGTGTCAGCCGTGTCACTGTGAAGAAAAGCAAGAAT ATACTGTTTGTCATCTCGAAGCCAGATGTGTTCAAGAGCCCGAACTCAGACEST: gi|211155649|gb|FL446891.1|FL446891
genomic: TGAAGCCCATCACTGGTGTCAGCCGTGTCACTGTGAAGAAAAGCAAGAATgtaattcacc ... tttttcccagATACTGTTTGTCATCTCGAAGCCAGATGTGTTCAAGAGCCCGAACTCAGAC
EST: TGAAGCCCATCACTGGTGTCAGCCGTGTCACTGTGAAGAAAAGCAAGAAT ATACTGTTTGTCATCTCGAAGCCAGATGTGTTCAAGAGCCCGAACTCAGACEST: gi|211435454|gb|FL453398.1|FL453398
genomic: TGAAGCCCATCACTGGTGTCAGCCGTGTCACTGTGAAGAAAAGCAAGAATgtaattcacc ... tttttcccagATACTGTTTGTCATCTCGAAGCCAGATGTGTTCAAGAGCCCGAACTCAGAC
EST: TGAAGCCCATCACTGGTGTCAGCCGTGTCACTGTGAAGAAAAGCAAGAAT ATACTGTTTGTCATCTCGAAGCCAGATGTGTTCAAGAGCCCGAACTCAGAC
genomic: TGAAGCCCATCACTGGTGTCAGCCGTGTCACTGTGAAGAAAAGCAAGAATgtaattcacc ... tttttcccagATACTGTTTGTCATCTCGAAGCCAGATGTGTTCAAGAGCCCGAACTCAGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAAAGCAGGAGTGAGAAGAAGAGCCGCAAAGCCATGCTGAAGCTTGGCATGAAGCCCATCACTGGTGTCAGCCGTGTCACTGTGAAGAAAAGCAAGAATgtaattcaccacgcaaactggcctatctttattgttgtctggctaacatggtatatattatctttattgttgtctggctaacatgataaatgcacatatttttcccag
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA