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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAGCAACTCAGGAGGCTACAAATGTTGAAAGTCTACAAAACGGTCCTACTCTTGAAATTCGGATACCTGCCGAATTTGTTACTTCCACTAATCGTCAAgtgagtgtacatactaagcagacaatctcagtttcagttcctctggttatctccatgctccatgtggagactgaagctctgtcagcaactctgttatata...

Basic information

species Zea mays
transcript GRMZM2G464000_T02
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211146179|gb|FK958443.1|FK958443
EST:     CTCTTGAAATTCGGATACCTGCCGAATTTGTTACTTCCACTAATCGTCAA                         GTAAAGGGTGCTCAACTTTGGGGAACAGATATATATACAAATGATTCAGAT
genomic: CTCTTGAAATTCGGATACCTGCCGAATTTGTTACTTCCACTAATCGTCAAgtgagtgtac ... ttttgtgcagGTAAAGGGTGCTCAACTTTGGGGAACAGATATATATACAAATGATTCAGAT
EST: gi|26558158|gb|CA830393.1|CA830393
EST:     CTCTTGAAATTCGGATACCTGCCGAATTTGTTACTTCCACTAATCGTCAA                         GTAAAGGGTGCTCAACTTTGGGGAACAGATATATATACAAATGATTCAGAT
genomic: CTCTTGAAATTCGGATACCTGCCGAATTTGTTACTTCCACTAATCGTCAAgtgagtgtac ... ttttgtgcagGTAAAGGGTGCTCAACTTTGGGGAACAGATATATATACAAATGATTCAGAT
EST: gi|67024103|gb|CO452852.1|CO452852
EST:     CTCTTGAAATTCGGATACCTGCCGAATTTGTTACTTCCACTAATCGTCAA                         GTAAAGGGTGCTCAACTTTGGGGAACAGATATATATACAAATGATTCAGAT
genomic: CTCTTGAAATTCGGATACCTGCCGAATTTGTTACTTCCACTAATCGTCAAgtgagtgtac ... ttttgtgcagGTAAAGGGTGCTCAACTTTGGGGAACAGATATATATACAAATGATTCAGAT
EST: gi|21987866|gb|BQ779394.1|BQ779394
EST:     CTCTTGAAATTCGGATACCTGCCGAATTTGTTACTTCCACTAATCGTCAA                         GTAAAGGGTGCTCAACTTTGGGGAACAGATATATATACAAATGATTCAGAT
genomic: CTCTTGAAATTCGGATACCTGCCGAATTTGTTACTTCCACTAATCGTCAAgtgagtgtac ... ttttgtgcagGTAAAGGGTGCTCAACTTTGGGGAACAGATATATATACAAATGATTCAGAT
EST: gi|32931653|gb|CF036465.1|CF036465
EST:     CTCTTGAAATTCGGATACCTGCCGAATTTGTTACTTCCACTAATCGTCAA                         GTAAAGGGTGCTCAACTTTGGGGAACAGATATATATACAAATGATTCAGAT
genomic: CTCTTGAAATTCGGATACCTGCCGAATTTGTTACTTCCACTAATCGTCAAgtgagtgtac ... ttttgtgcagGTAAAGGGTGCTCAACTTTGGGGAACAGATATATATACAAATGATTCAGAT
EST: gi|32934961|gb|CF039773.1|CF039773
EST:     CTCTTGAAATTCGGATACCTGCCGAATTTGTTACTTCCACTAATCGTCAA                         GTAAAGGGTGCTCAACTTTGGGGAACAGATATATATACAAATGATTCAGAT
genomic: CTCTTGAAATTCGGATACCTGCCGAATTTGTTACTTCCACTAATCGTCAAgtgagtgtac ... ttttgtgcagGTAAAGGGTGCTCAACTTTGGGGAACAGATATATATACAAATGATTCAGAT