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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGATTTGAAGTCGAATGGACTCTCTGGACAGATCCCCGATGAGATTGGTGATTGTTCTTTGCTCGAAACTTTgtaagtaggtttcagttttgcttatgtattttcttttccaaaaaatggtttagattcaaatgttcgttgccttgttgactgtaaactcttctcagtagtg...

Basic information

species Zea mays
transcript GRMZM2G463904_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G463904_T02 (Zea mays), 5'ss of exon 3
lower sequence: AT2G26330.1 (Arabidopsis thaliana), 5'ss of exon 4
CGATTTGAAGTCGAATGGACTCTCTGGACAGATCCCCGATGAGATTGGTGATTGTTCTTTGCTCGAAACTTTgtaagtaggtt--tcagttttgcttatgtattttcttttccaaaaaatggtttagattcaaatgttcgttgccttgttgactgtaaactcttctcagtagtg
 ||| ||      ||| |  | |||||||| ||||| |||||||||||||| |||||||   |  |||  ||||||| |   |  |  || ||  |     |||    |||     | |  | ||  |||  |      ||   | |||||  |      | |  ||||     
TGATCTGCGAGGTAATCGCTTGTCTGGACAAATCCCTGATGAGATTGGTGACTGTTCTTCTTTGCAAAACTTgtaagaacagtgattggtgttattctaccattaaacttttgttcatagaggttttatttgatgaagtgtgttcatgttgttt------tttattcag-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211153833|gb|FL430118.1|FL430118
EST:     TCTGGACAGATCCCCGATGAGATTGGTGATTGTTCTTTGCTCGAAACTTT                         GGATTTGTCATCTAACAATCTAAAAGGAGACATACCATTCTCCATGTCCAA
genomic: TCTGGACAGATCCCCGATGAGATTGGTGATTGTTCTTTGCTCGAAACTTTgtaagtaggt ... tttgatccagGGATTTGTCATCTAACAATCTAGAAGGAGACATACCATTCTCCATGTCCAA
EST: gi|149080168|gb|EE169186.2|EE169186
EST:     TCTGGACAGATCCCCGATGAGATTGGTGATTGTTCTTTGCTCGAAACTTT                         GGATTTGTCATCTAACAATCTAGAAGGAGACATACCATTCTCCATGTCCAA
genomic: TCTGGACAGATCCCCGATGAGATTGGTGATTGTTCTTTGCTCGAAACTTTgtaagtaggt ... tttgatccagGGATTTGTCATCTAACAATCTAGAAGGAGACATACCATTCTCCATGTCCAA