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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCATTGAGGGAAGCACTTGCTCAAGCACAATCTTCAAGAATTGGGTCAACCGCCAGGGCATTGAGAGAGTCTCTGCATCCAGTACTGAGACAAAAATTGgtatattctatacatattatcatatgtggtgttgcaggttacacgtttctctttaacctgaaacgattcctacag

Basic information

species Zea mays
transcript GRMZM2G462803_T04
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G462803_T04 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g21080.1 (Oryza sativa), 5'ss of exon 7
TTCATTGAGGGAAGCACTTGCTCAAGCACAATCTTCAAGAATTGGGTCAACCGCCAGGGCATTGAGAGAGTCTCTGCATCCAGTACTGAGACAAAAATTGgtatattctatacatattatcatatgtggtgttgcaggttacacgtttctcttt----aacctg--aaacgattcctacag
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TTCATTGAGAGAAGCACTTGCTCAAGCGCAGTCTTCAAGGATTGGATCAACCGCGAGGGCACTGAGAGAATCTCTACATCCAGTGCTGAGACAAAAGTTGgtacgtattaca-atcttat-gtggatctttatgtttcttctctttttctttttgaaaaatctgacagaaaattcctacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67031132|gb|CO459881.1|CO459881
EST:     CCGCCAGGGCATTGAGAGAGTCTCTGCATCCAGTACTGAGACAAAAATTG                         GAACTTTGGGAAGAAAATCTCAGTACTGCTGTGAGCCTCGAAGTGTTGAGA
genomic: CCGCCAGGGCATTGAGAGAGTCTCTGCATCCAGTACTGAGACAAAAATTGgtatattcta ... attcctacagGAACTTTGGGAAGAAAATCTCAGTACTGCTGTGAGCCTCGAAGTGTTGAGA