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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAAAGTGAAGACGTTTCAGATCATTGTCCTGCAAGGGATCATTGGCTCGTTGCCGTGGACTGCTATAGTTTTCTTCACAATGTGGTTCGAACTCATTGgtacaatagcaaccatatatatacttttaataaaaagtctgataacaatgctcttaaaatttgaattctaacatcgttgaacactcttag

Basic information

species Zea mays
transcript GRMZM2G462325_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G462325_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os07g10820.1 (Oryza sativa), 5'ss of exon 3
ATGAAAGTGAAGACGTTTCAGATCATTGTCCTGCAAGGGATCATTGGCTCGTTGCCGTGGACTGCTATAGTTTTCTTCACAATGTGGTTCGAACTCATTGgtacaatagcaaccatatatatacttttaataaaaagtctgataacaatgctcttaaaatttgaattctaacatcgttgaacactcttag
||||| |||  ||||||||||||||| ||||||||||| || ||||| || ||||| |||||||| ||||||||||||||||||||||| |||||||| ||||  ||  |||    ||   || ||| || |   |   |||| ||| ||| || ||  |||||  || || ||  || ||  |||||||
ATGAAGGTGCGGACGTTTCAGATCATCGTCCTGCAAGGAATAATTGGATCATTGCCATGGACTGCCATAGTTTTCTTCACAATGTGGTTTGAACTCATCGgtatgatgacaaattgattattattttgaacactcaaa-tgattacagtgccctcaa--tttgacgtc-aagatgtttaaatcctcttag

upper sequence: GRMZM2G462325_T03 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA01G38460.1 (Glycine max), 5'ss of exon 3
ATGAAAGTGAAGACGTTTCAGATCATTGTCCTGCAAGGGATCATTGGCTCGTTGCCGTGGACTGCTATAGTTTTCTTCACAATGTGGTTCGAACTCATTGgtacaatagcaacca-tatatatacttttaataaaaagtctgataacaatgctcttaaaatttgaattctaacatc-gttgaac-actcttag-------
|| |||||||| || ||||| || |||||| | ||||| || ||||| ||  ||||||||||||| || || ||||||||||||||||||||||| ||||||      | | |||   | | ||| |  || |         |  | |    | |  ||| ||| ||| |  || | |||| || ||   |         
ATCAAAGTGAAAACATTTCAAATAATTGTCTTACAAGGCATTATTGGGTCACTGCCGTGGACTGCCATGGTGTTCTTCACAATGTGGTTCGAACTAATTGgtgagcctgaagccaacttctttacataaaacatgctaatgcaacatagcagtttgcaaaattgtatttttgcaacagttgtactacaaatcaagatcac

upper sequence: GRMZM2G462325_T03 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA11G06840.1 (Glycine max), 5'ss of exon 2
ATGAAAGTGAAGACGTTTCAGATCATTGTCCTGCAAGGGATCATTGGCTCGTTGCCGTGGACTGCTATAGTTTTCTTCACAATGTGGTTCGAACTCATTGgtacaatagcaaccatatatatacttttaataaaaagtctgat--aacaatgctctt---aaaatttgaattctaacatcgttgaacactcttag------------------------------------------------------------------------------------------------
|| |||||||| || ||||| || |||| | | ||||  || ||||| ||  ||||||||||||| || || ||||||||||||||||||||||| ||||||  |  |  || |  | |  |  |||  ||||| |  || ||  |||   ||  ||   |||| ||| ||| |   | || |    |||   |                                                                                                 
ATCAAAGTGAAAACATTTCAAATAATTGGCTTACAAGTCATTATTGGGTCACTGCCGTGGACTGCCATGGTGTTCTTCACAATGTGGTTCGAACTGATTGgtg-agcatgaagccaaaacttg-tttacataaagatgctaatgcaacgtagcaatttgcaaaaattgtatttttgtaacggttg-tactacaaatcaagatcattaatagcctcctcaaatatcttttatgaggcgtgatgcttttatcaacttgctcgacaattgacatgatgaattgatattgtgcag

upper sequence: GRMZM2G462325_T03 (Zea mays), 5'ss of exon 3
lower sequence: AT2G18590.1 (Arabidopsis thaliana), 5'ss of exon 4
ATGAAAGTGAAGACGTTTCAGATCATTGTCCTGCAAGGGATCATTGGCTCGTTGCCGTGGACTGCTATAGTTTTCTTCACAATGTGGTTCGAACTCATTGgta-----caatagcaaccatatatatacttttaataaaaagtctgataacaatgctcttaaaatttgaattctaacatcgttga------acactcttag-
|  ||  | |  |||||||||||||| ||  ||||||| ||| | || ||| ||||||||| ||| ||  ||||||  |||||||||||||||||||||||||     | | | ||| | ||||| |  |||  || |||  ||  | |  ||    |   | |||  |  ||||||||   ||       | |  ||||  
ACCAAGTTAAGAACGTTTCAGATCATCGTATTGCAAGGAATCGTGGGTTCGGTGCCGTGGAATGCAATGCTTTTCTGGACAATGTGGTTCGAACTCATTGgtattcatccaaaccaaacgtatattttttttatatcaaacatcaaacatgaaccaaccatatattcta--tctaacatgaatggttcattaaatccttaac

upper sequence: GRMZM2G462325_T03 (Zea mays), 5'ss of exon 3
lower sequence: AT4G36790.1 (Arabidopsis thaliana), 5'ss of exon 4
ATGAAAGTGAAGACGTTTCAGATCATTGTCCTGCAAGGGATCATTGGCTCGTTGCCGTGGACTGCTATAGTTTTCTTCACAATGTGGTTCGAACTCATTGgta--caatagcaaccatatata-tacttttaataaaaagtctgataacaatgctcttaaaatttgaattctaacatcgttgaacactcttag------
 | ||||| |  || |||||||| || |||  |||||| |||||||| ||||| |||||||| || || |||||||| ||||||||||| || || |||||||  |   |    | | | | |  ||||| || |   |   || |    | |  || | |  |||| |   ||||   ||      | || |      
GTCAAAGTAAGTACCTTTCAGATAATCGTCGCGCAAGGAATCATTGGTTCGTTTCCGTGGACCGCGATGGTTTTCTTTACAATGTGGTTTGAGCTTATTGgtaaacggcatttcctacaaaaaacactttgaacatcca--ttgtttgtcaagaactgagatcttgagtgtaaacagtctttttttttgtttgttttag

upper sequence: GRMZM2G462325_T03 (Zea mays), 5'ss of exon 3
lower sequence: Vv04s0023g01270.t01 (Vitis vinifera), 5'ss of exon 3
ATGAAAGTGAAGACGTTTCAGATCATTGTCCTGCAAGGGATCATTGGCTCGTTGCCGTGGACTGCTATAGTTTTCTTCACAATGTGGTTCGAACTCATTGgtacaatagcaaccatatatatactt---ttaataaaaagtctgataacaatgctcttaaaatttgaa------ttctaacatc-gttgaacactcttag
|| |||||| | || ||||||||||||||| |||| ||  |  |||| ||  | || |||||||| || ||||||||||| |||||||| ||||| ||||||        |  ||   |||| | |   || || ||  |  ||||||   |    || |   |||        || |     | |||| | ||   |  
ATAAAAGTGCAAACATTTCAGATCATTGTCTTGCAGGGTGTTGTTGGTTCACTACCATGGACTGCCATGGTTTTCTTCACCATGTGGTTTGAACTAATTGgtgagcgcaaattcaagaatattcctaagtttatcaagtgcatgataaatttaactttgagggttggccgtgtcttttggtgcctgttgtaaacctctgt