1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTGTCGTGCATAGTAGGTTCAGTTGTTGTTGTCATGCATGCTCCTGAAGAGCATATGCCTAACTCTGTCAAGGAAATCTGGAACCTAGCTACTCAACCAGgtgagtcattgcaacccagtcttgcgcatgacagttcgctggagctgcaggttctcacagaatctctccatcctggggtgtcgatcattggcag
species | Zea mays |
transcript | GRMZM2G461791_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCATATGCCTAACTCTGTCAAGGAAATCTGGAACCTAGCTACTCAACCAG GGTTTCTAGCATGTGTGGTGACAGCATTGTTACTTGTGGGAGCGCTAGTACEST: gi|32798698|gb|CD950934.1|CD950934
genomic: GCATATGCCTAACTCTGTCAAGGAAATCTGGAACCTAGCTACTCAACCAGgtgagtcatt ... tcattggcagGGTTTCTAGCATATGTGGTGACAGCATTGTTACTTGTGGGAGCGCTAGTAC
EST: GCATATGCCTAACTCTGTCAAGGAAATCTGGAACCTAGCTACTCAACCAG GGTTTCTAGCATATGTGGTGACAGCATTGTTACTTGTGGGAGCGCTAGTACEST: gi|21481199|gb|BQ577882.1|BQ577882
genomic: GCATATGCCTAACTCTGTCAAGGAAATCTGGAACCTAGCTACTCAACCAGgtgagtcatt ... tcattggcagGGTTTCTAGCATATGTGGTGACAGCATTGTTACTTGTGGGAGCGCTAGTAC
EST: GCATATGCCTAACTCTGTCAAGGAAATCTGGAACCTAGCTACTCAACCAG GGTTTCTAGCATATGTGGTGACAGCATTGTTACTTGTGGGAGCGCTAGTACEST: gi|26455492|gb|CA827075.1|CA827075
genomic: GCATATGCCTAACTCTGTCAAGGAAATCTGGAACCTAGCTACTCAACCAGgtgagtcatt ... tcattggcagGGTTTCTAGCATATGTGGTGACAGCATTGTTACTTGTGGGAGCGCTAGTAC
EST: GCATATGCCTAACTCTGTCAAGGAAATCTGGAACCTAGCTACTCAACCAG GGTTTCTAGCATATGTGGTGACAGCATTGTTACTTGTGGGAGCGCTAGEST: gi|21391006|gb|BQ529055.1|BQ529055
genomic: GCATATGCCTAACTCTGTCAAGGAAATCTGGAACCTAGCTACTCAACCAGgtgagtcatt ... tcattggcagGGTTTCTAGCATATGTGGTGACAGCATTGTTACTTGTGGGAGCGCTAG
EST: GCATATGCCTAACTCTGTCAAGGAAATCTGGAACCTAGCTACTCAACCAG GGTTTCTAGCATATGTGGTGACAGCATTGTTACTTGTGGGAGCGCTAGTACEST: gi|87154688|gb|DY399477.1|DY399477
genomic: GCATATGCCTAACTCTGTCAAGGAAATCTGGAACCTAGCTACTCAACCAGgtgagtcatt ... tcattggcagGGTTTCTAGCATATGTGGTGACAGCATTGTTACTTGTGGGAGCGCTAGTAC
EST: GCATATGCCTAACTCTGTCAAGGAAATCTGGAACCTAGCTACTCAACCAG GGTTTCTAGCATATGTGGTGACAGCATTGTTACTTGTGGGAGCGCTAGTAC
genomic: GCATATGCCTAACTCTGTCAAGGAAATCTGGAACCTAGCTACTCAACCAGgtgagtcatt ... tcattggcagGGTTTCTAGCATATGTGGTGACAGCATTGTTACTTGTGGGAGCGCTAGTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTCGTGCATAGTAGGTTCAGTTGTTGTTGTCATGCATGCTCCTGAAGAGCATATGCCTAACTCTGTCAAGGAAATCTGGAACCTAGCTACTCAACCAGgtgagtcattgcaacccagtcttgcgcatgacagttcgctggagctgcaggttctcacagaatctctccatcctggggtgtcgatcattggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA