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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCTGAACCTCCGGTCTGAGATCGTGCCTGCCACGCTCAAGAAGTCTGCCAAGCCACCGGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagccttaaatcttgtgttgctgaggcaataatgtaacagagcatgggggtggtgggattaaattatccgccatgacagggagaggcgagatcttg...

Basic information

species Zea mays
transcript GRMZM2G459828_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G459828_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os04g35090.1 (Oryza sativa), 5'ss of exon 3
ACCTGAACCTCCGGTCTGAGATCGTGCCTGCCACGCTCAAGAAGTCTGCCAAGCCACCGGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagccttaaatcttgtgttgctgaggcaataatgtaacagagcatgggggtggtgggattaaattatccgccatgacagggagaggcgagatcttg------
|||| ||||| |  |||||||| ||||||||||| |||||||||||||||| |||||| |||||||||||||| |||||||| ||||| |||||||||||||| |    ||    || ||| ||||      | | || |    |    |    |  |   ||    |||     ||||   |   | | |   || |        
ACCTTAACCTGCCATCTGAGATTGTGCCTGCCACACTCAAGAAGTCTGCCAGGCCACCTGGCCGCCCATTTGGTTCTGGCCCACCTGGCGACCGCCCAAGgtatacatatt----ctcgtgatgctcccttca-agtgcatgcaatttggcatatactataatgtgcttagtgaacatgg-ggcctgtgtcaccatttcaccatga

upper sequence: GRMZM2G459828_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g34460.1 (Oryza sativa), 5'ss of exon 3
ACCTGAACCTCCGGTCTGAGATCGTGCCTGCCACGCTCAAGAAGTCTGCCAAGCCACCGGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgt---aaaagccttaaatctt--gtgttgctgaggcaataa-tgtaacaga-gcatgggggtggtgggattaaattatccgccatgacagggagaggcgagatcttg
|||| ||| | | ||||||||| || ||||| || |||||||||||||| | |||||| ||||||||||||||||||||||| |||||||| ||||||||||   ||    |||   ||||   | || ||| ||    || ||||||  |    |              ||| ||    |  ||   |  | |             
ACCTTAACTTGCCGTCTGAGATTGTACCTGCTACACTCAAGAAGTCTGCAAGGCCACCAGGCCGCCCATTTGGCTCTGGCCCCCCTGGTGATCGCCCAAGgtcctaattttcttctctcttcaatctttctggggtttcaagtgtaacttacatttaataacttacttgctaatttgaaggttattttatcgcggtttac-------