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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGATTACAAGTATACCAAgtaagggagcttctagtgttttgttaagttcattccttgtatttccgaagggtggaagtggaaggaaattgaattagagttagtggaaccctttgtgctgtagagactgcattagttatagactgttaactgtgttgaggagcgagtttgattctttcatatgtaatgaactgattacttaagtggatgttgggtag

Basic information

species Zea mays
transcript GRMZM2G459291_T02
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19350831|gb|BM895363.1|BM895363
EST:     ACGTTGGAGATTACAAGTATACCAA                         GAACAATGTGGAGGATATGAGCGTCGTTGAGATGTTTCTTCAAGAGGTAGG
genomic: ACGTTGGAGATTACAAGTATACCAAgtaagggagc ... tgttgggtagGAACAATGTGGAGGATATAAGCGTCGTTGAGATGTTTCTTCAAGAGGTAGG
EST: gi|6227239|gb|AW155838.1|AW155838
EST:     GTTGGAGATTACAAGTATACCAA                         GAACAATGTGGAGGATATAAGCGTCGTTGAGATGTTTCTTCAAGAGGTAGG
genomic: GTTGGAGATTACAAGTATACCAAgtaagggagc ... tgttgggtagGAACAATGTGGAGGATATAAGCGTCGTTGAGATGTTTCTTCAAGAGGTAGG
EST: gi|148945620|gb|EC890877.2|EC890877
EST:     ACGTT---GATTACAAGTATACCAA                         GAACAATGTGGAGGATATAAGCGTCGTTGAGATGTTTCTTCAAGAGGTAGG
genomic: ACGTTGGAGATTACAAGTATACCAAgtaagggagc ... tgttgggtagGAACAATGTGGAGGATATAAGCGTCGTTGAGATGTTTCTTCAAGAGGTAGG
EST: gi|211541590|gb|FL022793.1|FL022793
EST:     ACGTTGGAGATTACAAGTATACCAA                         GAACAATGTGGAGGATATAAGCGTCGTTGAGATGTTTCTTCAAGAGGTAGG
genomic: ACGTTGGAGATTACAAGTATACCAAgtaagggagc ... tgttgggtagGAACAATGTGGAGGATATAAGCGTCGTTGAGATGTTTCTTCAAGAGGTAGG
EST: gi|76018399|gb|DT945569.1|DT945569
EST:     ACGTTGGAGATTACAAGTATACCAA                         GAACAATGTGGAGGATATAAGCGTCGTTGAGATGTTTCTTCAAGAGGTAGG
genomic: ACGTTGGAGATTACAAGTATACCAAgtaagggagc ... tgttgggtagGAACAATGTGGAGGATATAAGCGTCGTTGAGATGTTTCTTCAAGAGGTAGG
EST: gi|60348894|gb|DN215867.1|DN215867
EST:     ACGTTGGAGATTACAAGTATACCAA                         GAACAATGTGGAGGATATGAGCGTCGTTGAGATGTTTCTTCAAGAGGTAGG
genomic: ACGTTGGAGATTACAAGTATACCAAgtaagggagc ... tgttgggtagGAACAATGTGGAGGATATAAGCGTCGTTGAGATGTTTCTTCAAGAGGTAGG
EST: gi|74239921|gb|DT647835.1|DT647835
EST:     ACGTTGGAGATTACAAGTATACCAA                         GAACAATGTGGAGGATATAAGCGTCGTTGAGATGTTTCTTCAAGAGGTAGG
genomic: ACGTTGGAGATTACAAGTATACCAAgtaagggagc ... tgttgggtagGAACAATGTGGAGGATATAAGCGTCGTTGAGATGTTTCTTCAAGAGGTAGG