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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTGCTACCTTGATTGCCTCTCCGTCTTACCCAAATGCCATTGCTTGGTCAAGTGACAATCTCGTGGCTGTCGCATCTGGTCATATTGTAACTATTCTGgtaagtgcaatccaatcactcagatgatcacatatatgtcatattctcagggtcatgatagtttatgaatggaatatggattagcttaaccttgcagtaaccatgtccattttcccatattcaag

Basic information

species Zea mays
transcript GRMZM2G458266_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G458266_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g50690.1 (Oryza sativa), 5'ss of exon 2
AGCTGCTACCTTGATTGCCTCTCCGTCTTACCCAAATGCCATTGCTTGGTCAAGTGACAATCTCGTGGCTGTCGCATCTGGTCATATTGTAACTATTCTGgtaagtgcaatccaatcac-tcagatgatcacatatatgtcatattc-tcagg-gtcatgatagtttatgaatggaatatggattagcttaaccttgcagtaaccatgtccattttcccatattcaag
 ||||| |||||||| || || ||||| ||||||||||| || |||||||| | ||| || || |||||||| || ||||||||  || | ||||| |||||| |||   |   ||  | | ||   ||   |   ||||  |  || ||||| || ||||  ||| ||   ||   | | ||||    ||                                     
GGCTGCCACCTTGATCGCGTCGCCGTCGTACCCAAATGCAATCGCTTGGTCGACTGAGAACCTGGTGGCTGTTGCCTCTGGTCACCTTATCACTATCCTGgtatgtgtggtttcattgcattagtgtattcgaaccatgttgtcctcctcaggagttatgactgttcatct-tgtgtttttgatt---ctag------------------------------------