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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGATTTCACTCCGGGAATATACACCGAAGACTGCTTGTTCGAGGACCCGACGATCAAGTTCCGCGgtacgtaatttaaaacatctcttttgttgatgaacatttgttagcctgtactgtctgagagaagaagaagaaggaaaaaaaaaaaccgagctgtgacaatgagtgcgtgcgtgcgttcttgctcctcgcacag

Basic information

species Zea mays
transcript GRMZM2G454928_T05
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60401348|gb|DN234155.1|DN234155
EST:     AATATACACCGAAGACTGCTTGTTCGAGGACCCGACGATTAAGTTCCGCG                         GACTCTCCAGGTACTCCCAGAACCTGGGTCTGCTGGTGCCCTTCTTCGACA
genomic: AATATACACCGAAGACTGCTTGTTCGAGGACCCGACGATCAAGTTCCGCGgtacgtaatt ... cctcgcacagGACTCTCCAGGTACTCCCAGAACCTGGGTCTGCTGGTGCCCTTCTTCGACA
EST: gi|78022296|gb|DV490683.1|DV490683
EST:     AATATACACCGAAGACTGCTTGTTCGAGGACCCGACGATCAAGTTCCGCG                         GACTCTCCAGGTACTCCCAGAACCTGGGTCTGCTGGTGCCCTTCTTCGACA
genomic: AATATACACCGAAGACTGCTTGTTCGAGGACCCGACGATCAAGTTCCGCGgtacgtaatt ... cctcgcacagGACTCTCCAGGTACTCCCAGAACCTGGGTCTGCTGGTGCCCTTCTTCGACA
EST: gi|78122856|gb|DV541240.1|DV541240
EST:     AATATACACCGAAGACTGCTTGTTCGAGGACCCGACGATCAAGTTCCGCG                         GACTCTCCAGGTACTCCCAGAACCTGGGTCTGCTGGTGCCCTTCTTCGACA
genomic: AATATACACCGAAGACTGCTTGTTCGAGGACCCGACGATCAAGTTCCGCGgtacgtaatt ... cctcgcacagGACTCTCCAGGTACTCCCAGAACCTGGGTCTGCTGGTGCCCTTCTTCGACA
EST: gi|110521286|gb|EE025470.1|EE025470
EST:     AATATACACCGAAGACTGCTTGTTGGAGGACCGGACGATCAAGTTCCGCG                         GACTCTCCAGGTACTCCCAGAACCTGGGTCTGCTGGTGCCCTTCTTCGACA
genomic: AATATACACCGAAGACTGCTTGTTCGAGGACCCGACGATCAAGTTCCGCGgtacgtaatt ... cctcgcacagGACTCTCCAGGTACTCCCAGAACCTGGGTCTGCTGGTGCCCTTCTTCGACA
EST: gi|148974669|gb|EE025471.2|EE025471
EST:     AATATACACCGAAGACTGCTTGTTCGAGGACCCGACGATCAAGTTCCGCG                         GACTCTCCAGGTACTCCCAGAACCTGGGTCTGCTGGTGCCCTTCTTCGACA
genomic: AATATACACCGAAGACTGCTTGTTCGAGGACCCGACGATCAAGTTCCGCGgtacgtaatt ... cctcgcacagGACTCTCCAGGTACTCCCAGAACCTGGGTCTGCTGGTGCCCTTCTTCGACA
EST: gi|71320936|gb|DR797185.1|DR797185
EST:     AATATACACCGAAGACTGCTTGTTCGAGGACCCGACGATCAAGTTCCGCG                         GACTCTCCAGGTACTCCCAGAACCTGGGTCTGCTGGTGCCCTTCTTCGACA
genomic: AATATACACCGAAGACTGCTTGTTCGAGGACCCGACGATCAAGTTCCGCGgtacgtaatt ... cctcgcacagGACTCTCCAGGTACTCCCAGAACCTGGGTCTGCTGGTGCCCTTCTTCGACA
EST: gi|78109734|gb|DV528150.1|DV528150
EST:     AATATACACCGAAGACTGCTTGTTCGAGGACCCGACGATCAAGTTCCGCG                         GACTCTCCAGGTACTCCCAGAACCTGGGTCTGCTGGTGCCCTTCTTCGACA
genomic: AATATACACCGAAGACTGCTTGTTCGAGGACCCGACGATCAAGTTCCGCGgtacgtaatt ... cctcgcacagGACTCTCCAGGTACTCCCAGAACCTGGGTCTGCTGGTGCCCTTCTTCGACA
EST: gi|78122857|gb|DV541241.1|DV541241
EST:     AATATACACCGAAGACTGCTTGTTCGAGGACCCGACGATCAAGTTCCGCG                         GACTCTCCAGGTACTCCCAGAACCTGGGTCTGCTGG
genomic: AATATACACCGAAGACTGCTTGTTCGAGGACCCGACGATCAAGTTCCGCGgtacgtaatt ... cctcgcacagGACTCTCCAGGTACTCCCAGAACCTGGGTCTGCTGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGGATTTCACTCCGGGAATATACACCGAAGACTGCTTGTTCGAGGACCCGACGATCAAGTTCCGCGgtacgtaatttaaaacatctcttttgttgatgaacatttgttagcctgtactgtctgagagaagaagaagaaggaaaaaaaaaaaccgagctgtgacaatgagtgcgtgcgtgcgttcttgctcctcgcacag

- - - - - - - - - - - -  CGAAGA