1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CCGATCGACGAGGCCATGGAGTTCCTCAAGCGGGTGGAGGCGCAGCTCGACTCCATCGCCGGCGGCGGCTCCTCCTCCTCCGCGCGCCTCTCGCTCGCCGgtaagaagtaagatcgaccgatgatatatcggagcaccaggcaggccggccgcggcgcttcgtcgtcttctttctgcttgctctccgggtccttctctcg...
species | Zea mays |
transcript | GRMZM2G452178_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTCCATCGCCGGCGGCGGCTCCTCCTCCTCCGCGCGCCTCTCGCTCGCCG ATGGTAAGTCATCAGAAGGGGCCGGCTCTTCGGAAGACGACGACATGGATCEST: gi|93017531|gb|EB643051.1|EB643051
genomic: CTCCATCGCCGGCGGCGGCTCCTCCTCCTCCGCGCGCCTCTCGCTCGCCGgtaagaagta ... tcttctgcagATGGTAAGTCATCAGAAGGGGCCGGCTCTTCGGAAGACGACGACATGGATC
EST: CTCCATCGCCGGCGGCGGCTCCTCCTCCTCCGCGCGCCTCTCGCTCGCCG ATGGTAAGTCATCAGAAGGGGCCGGCTCTTCGGAAGACGACGACATGGATCEST: gi|74233805|gb|DT641719.1|DT641719
genomic: CTCCATCGCCGGCGGCGGCTCCTCCTCCTCCGCGCGCCTCTCGCTCGCCGgtaagaagta ... tcttctgcagATGGTAAGTCATCAGAAGGGGCCGGCTCTTCGGAAGACGACGACATGGATC
EST: CTCCATCGCCGGCGGCGGCTCCTCCTCCTCCGCGCGCCTCTCGCTCGCCG ATGGTAAGTCATCAGAAGGGGCCGGCTCTTCGGAAGACGACGACATGGATCEST: gi|149101175|gb|EE187285.2|EE187285
genomic: CTCCATCGCCGGCGGCGGCTCCTCCTCCTCCGCGCGCCTCTCGCTCGCCGgtaagaagta ... tcttctgcagATGGTAAGTCATCAGAAGGGGCCGGCTCTTCGGAAGACGACGACATGGATC
EST: CTCCATCGCCGGCGGCGGCTCCTCCTCCTCCGCGCGCCTCTCGCTCGCCG ATGGTAAGTCATCAGAAGGGGCCGGCTCTTCGGAAGACGACGACATGGATC
genomic: CTCCATCGCCGGCGGCGGCTCCTCCTCCTCCGCGCGCCTCTCGCTCGCCGgtaagaagta ... tcttctgcagATGGTAAGTCATCAGAAGGGGCCGGCTCTTCGGAAGACGACGACATGGATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGATCGACGAGGCCATGGAGTTCCTCAAGCGGGTGGAGGCGCAGCTCGACTCCATCGCCGGCGGCGGCTCCTCCTCCTCCGCGCGCCTCTCGCTCGCCGgtaagaagtaagatcgaccgatgatatatcggagcaccaggcaggccggccgcggcgcttcgtcgtcttctttctgcttgctctccgggtccttctctcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC