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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACTGCTGTAGCCAATGGGGTCATGATTTTCGTCCTGACTACAAGAATCTTGGCATTTTGAAAATTCAATTTCCCAGTGTTCCAATGATAGCTTTAACTgtaagtaaagtaaaaaagttcaaataacattcaattttagaagtaaattgtgcgtgaactccagcagttgagcctataatattttgcag

Basic information

species Zea mays
transcript GRMZM2G451856_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G451856_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os11g48090.3 (Oryza sativa), 5'ss of exon 6
TCACTGCTGTAGCCAATGGGGTCATGATTTTCGTCCTGACTACAAGAATCTTGGCATTTTGAAAATTCAATTTCCCAGTGTTCCAATGATAGCTTTAACTgtaagtaaagtaaaaaagttcaaataacattcaattttagaagtaaattgtgcgtgaactccagcagttgagccta--taatattttgcag
 ||||||||||| |||||||| ||||||||||| || ||||||||||||||||||||||| ||  | || |||||||||||||| ||||||||||||||||| |||   | ||| ||  ||      ||||   |   | || |||||| |   || | |     | |   ||||   |  | ||||||||
ACACTGCTGTAGTCAATGGGGCCATGATTTTCGCCCAGACTACAAGAATCTTGGCATTTTAAAGGTCCAGTTTCCCAGTGTTCCTATGATAGCTTTAACTgtgagttgcgaaaataatatc------cattttttacaataattaaattttaactgtaatgtga-aataaggcctgcttctttttttgcag

upper sequence: GRMZM2G451856_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA09G34860.1 (Glycine max), 5'ss of exon 5
TCACTGCTGTAGCCAATGGGGTCATGATTTTCGTCCTGACTACAAGAATCTTGGCATTTTGAAAATTCAATTTCCCAGTGTTCCAATGATAGCTTTAACTgtaagt---------aaa-----gtaaaaaagttcaaataa---cattcaattttagaagtaaattgtgcgtgaactccag--cagttgagcctataatattttgcag
 || |||||||| |||||||||||||| ||||| |||||||||||||  ||  | ||| | || |  || || ||  ||||||| ||  | ||||| |||||| ||         ||      || ||  | | |||||||    |||  |||| | | |    |  | | | |  |  |   |  || |    ||  |||||| |||
ACATTGCTGTAGTCAATGGGGTCATGACTTTCGACCTGACTACAAGAGCCTCAGTATTCTCAAGACACAGTTCCCTCGTGTTCCTATTGTTGCTTTGACTgtacgtctttatctcaagtttctgttaagtattgcaaataaaattattagatttgatatgcttttcatacttaattttgatttctattaatgacatt-tatttttcag

upper sequence: GRMZM2G451856_T02 (Zea mays), 5'ss of exon 6
lower sequence: AT1G31360.1 (Arabidopsis thaliana), 5'ss of exon 5
TCACTGCTGTAGCCAATGGGGTCATGATTTTCGTCCTGACTACAAGAATCTTGGCATTTTGAAAATTCAATTTCCCAGTGTTCCAATGATAGCTTTAACTgtaagtaa--agtaaaaaagttcaaataacattcaattttagaagtaaattgtgcgtgaactccagcagttgagcctataatattttgcag------------
||| || ||||| || ||||||||||||||||| ||||| ||||||||  |  ||||| ||||||  || |||||||  ||||| ||| | |||||||||||| ||      |   |    |   ||| | |   |  ||| || || |  |  |  |    |  ||  || | | ||   |  ||  ||             
TCATTGTTGTAGTCAGTGGGGTCATGATTTTCGCCCTGATTACAAGAACTTAAGCATTCTGAAAACCCAGTTTCCCAAAGTTCCCATGGTGGCTTTAACTgtatgtttttgttttcatttatgggataccctgtgagctta-aattagacagcactagggagcttgc--ttcaccttactgtgcttatcataaggaccaattt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60348558|gb|DN215531.1|DN215531
EST:     TTGGCATTTTGAAAATTCAATTTCCCAGTGTTCCAATGATAGCTTTAACT                         GCAACTGCAACAAGTAAGGTCCAAATGGATTTAATGGAGATGCTCCACATC
genomic: TTGGCATTTTGAAAATTCAATTTCCCAGTGTTCCAATGATAGCTTTAACTgtaagtaaag ... tattttgcagGCAACTGCAACAAGTAAGGTCCAAATGGATTTAATGGAGATGCTCCACATC