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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAAAACGTGCCTCCGACATCCAATTCACGCCTTTCGCCGCTCCCTCCTGAACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAGgtgcatatgaatgtgcattgctttcgcacatgcaaaatgtggctataatgaacacacttactaggacatgctgttcagcacaaccaataacttgtgatttgtggatatccag

Basic information

species Zea mays
transcript GRMZM2G448715_T02
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211023196|gb|FK976150.1|FK976150
EST:     AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAG                         GACCTGAAGAAAAGAGAGAAGGAGCTGCAA-CAAGGGGAAGCGGAATTAAA
genomic: AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAGgtgcatatga ... ggatatccagGACCTGAAGAAAAGAGAGAAGGAGCTGCAAGCAAGGG-AAGCGGAATTAAA
EST: gi|24462488|gb|BM660019.1|BM660019
EST:     AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAG                         GACCTGAAGAAAAGAGAGAAGGA-CTTGCCAGCAAGGGAAGCGGAATTAAA
genomic: AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAGgtgcatatga ... ggatatccagGACCTGAAGAAAAGAGAGAAGGAGCT-GCAAGCAAGGGAAGCGGAATTAAA
EST: gi|91048315|gb|EB158733.1|EB158733
EST:     AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAG                         GACCTGAAGAAAAGAGAGAAGGAGCTGCAAGCAAGGGAAGCGGAATTAAAC
genomic: AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAGgtgcatatga ... ggatatccagGACCTGAAGAAAAGAGAGAAGGAGCTGCAAGCAAGGGAAGCGGAATTAAAC
EST: gi|33770808|gb|CF273102.1|CF273102
EST:     AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAG                         GACCTGAAGAAAAGAGAGAAGGAGCTGCAAGCAAGGGAAGCGGAATTAAAC
genomic: AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAGgtgcatatga ... ggatatccagGACCTGAAGAAAAGAGAGAAGGAGCTGCAAGCAAGGGAAGCGGAATTAAAC
EST: gi|211223444|gb|FL382580.1|FL382580
EST:     AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAG                         GACCTGAAGAAAAGAGAGAAGGAGCTGCAAS-AAGGGAAGCGGAATTAAAC
genomic: AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAGgtgcatatga ... ggatatccagGACCTGAAGAAAAGAGAGAAGGAGCTGCAAGCAAGGGAAGCGGAATTAAAC
EST: gi|28188216|gb|CB179826.1|CB179826
EST:     AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAG                         GACCTGAAGAAAGGAGAGAAGGAGCTGCAAGCAAGGGAAGCGGAATTAAAC
genomic: AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAGgtgcatatga ... ggatatccagGACCTGAAGAAAAGAGAGAAGGAGCTGCAAGCAAGGGAAGCGGAATTAAAC
EST: gi|76931490|gb|DV172743.1|DV172743
EST:     AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAG                         GACCTGAAGAAAAGAGAGAAGGAGCTGCAAGCAAGGGAAGCGGAATTAAAC
genomic: AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAGgtgcatatga ... ggatatccagGACCTGAAGAAAAGAGAGAAGGAGCTGCAAGCAAGGGAAGCGGAATTAAAC
EST: gi|211023197|gb|FK976151.1|FK976151
EST:     AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAG                         GACCTGAAGAAAAGAGAGAAGGAGCTGCAAS-AAGGGAAGCGGAATTAAAC
genomic: AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAGgtgcatatga ... ggatatccagGACCTGAAGAAAAGAGAGAAGGAGCTGCAAGCAAGGGAAGCGGAATTAAAC
EST: gi|211046010|gb|FL422511.1|FL422511
EST:     AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAG                         GACCTGAAGAAAAGAGAGAAGGAGCTGCAAGCAAGGGAAGCGGAATTAAAC
genomic: AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAGgtgcatatga ... ggatatccagGACCTGAAGAAAAGAGAGAAGGAGCTGCAAGCAAGGGAAGCGGAATTAAAC
EST: gi|211023203|gb|FK976157.1|FK976157
EST:     AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAG                         GACCTGAAGAAAAGAGAGAAGGAGCTGCAAGCAAGGGAAGCGGAATTAAAC
genomic: AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAGgtgcatatga ... ggatatccagGACCTGAAGAAAAGAGAGAAGGAGCTGCAAGCAAGGGAAGCGGAATTAAAC
EST: gi|37621984|gb|CF675037.1|CF675037
EST:     AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAG                         GACCTGAAGAAAAGAGAGAAGGAGCTGCAAGCAAGGGAAGCGGAATTAAAC
genomic: AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAGgtgcatatga ... ggatatccagGACCTGAAGAAAAGAGAGAAGGAGCTGCAAGCAAGGGAAGCGGAATTAAAC
EST: gi|211025647|gb|FK976165.1|FK976165
EST:     AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAG                         GACCTGAAGAAAAGAGAGAAGGAGCTGCAAGCAAGGGAAGCGGAATTAAAC
genomic: AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAGgtgcatatga ... ggatatccagGACCTGAAGAAAAGAGAGAAGGAGCTGCAAGCAAGGGAAGCGGAATTAAAC
EST: gi|89251197|gb|DY622983.1|DY622983
EST:     AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAG                         GACCTGAAGAAAAGAGAGAAGGAGCTGCAAGCAAGGGAAGCGGAATTAAAC
genomic: AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAGgtgcatatga ... ggatatccagGACCTGAAGAAAAGAGAGAAGGAGCTGCAAGCAAGGGAAGCGGAATTAAAC
EST: gi|37621886|gb|CF674939.1|CF674939
EST:     AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAG                         GACCTGAAGAAAAGAGAGAAGGAGCTGCAAGCAAGGGAAGCGGAATTAAAC
genomic: AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAGgtgcatatga ... ggatatccagGACCTGAAGAAAAGAGAGAAGGAGCTGCAAGCAAGGGAAGCGGAATTAAAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCAAAACGTGCCTCCGACATCCAATTCACGCCTTTCGCCGCTCCCTCCTGAACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAGgtgcatatgaatgtgcattgctttcgcacatgcaaaatgtggctataatgaacacacttactaggacatgctgttcagcacaaccaataacttgtgatttgtggatatccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA