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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCGGTCGTGTCGTCCGAGCGTTGATCTGAACCAGCGCAGTTTATCAGGGACGTAGCACTGTAGCAGTGAGTTGgtgagctctctcggctcatagaagccctacttttttttttcgagcacaggctgaaatgtcaactagtaacaaatctttgtctagtttaatgggaatcggc...

Basic information

species Zea mays
transcript GRMZM2G447433_T08
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211181950|gb|FL254913.1|FL254913
EST:     ATCTGAACCAGCGCAGTTTATCAGGGACGTAGCACTGTAGCAGTGAGTTG                         GGGAGGATGCCTGATATCCAGCTGGGATGCCACACTATAAGGTCCCATGGT
genomic: ATCTGAACCAGCGCAGTTTATCAGGGACGTAGCACTGTAGCAGTGAGTTGgtgagctctc ... tctgttctagGGGAGGATGCCTGATATCCAGCTGGGATGCCACACTATAAGGTCCCATGGT
EST: gi|211211372|gb|FL470796.1|FL470796
EST:     ATCTGAACCAGCGCAGTTTATCAGGGACGTAGCACTGTAGCAGTGAGTTG                         GGGAGGATGCCTGATATCCAACTGGGATGCCACACTATAAGGTCCCATGGT
genomic: ATCTGAACCAGCGCAGTTTATCAGGGACGTAGCACTGTAGCAGTGAGTTGgtgagctctc ... tctgttctagGGGAGGATGCCTGATATCCAGCTGGGATGCCACACTATAAGGTCCCATGGT
EST: gi|71439499|gb|DR820549.1|DR820549
EST:     ATCTGAACCAGCGCAGTTTATCAGGGACGTAGCACTGTAGCAGTGAGTTG                         GGGAGGATGCCTGATATCCAGCTGGGATGCCACACTATAAGGTCCCATGGT
genomic: ATCTGAACCAGCGCAGTTTATCAGGGACGTAGCACTGTAGCAGTGAGTTGgtgagctctc ... tctgttctagGGGAGGATGCCTGATATCCAGCTGGGATGCCACACTATAAGGTCCCATGGT
EST: gi|78114830|gb|DV533218.1|DV533218
EST:     ATCTGAACCAGCGCAGTTTATCAGGGACGTAGCACTGTAGCAGTGAGTTG                         GGGAGGATGCCTGATATCCAGCTGGGATGCCACACTATAAGGTCCCATGGT
genomic: ATCTGAACCAGCGCAGTTTATCAGGGACGTAGCACTGTAGCAGTGAGTTGgtgagctctc ... tctgttctagGGGAGGATGCCTGATATCCAGCTGGGATGCCACACTATAAGGTCCCATGGT
EST: gi|101397320|gb|EB820583.1|EB820583
EST:     ATCTGAACCAGCGCAGTTTATCAGGGACGTAGCACTGTAGCAGTGAGTTG                         GGGAGGATGCCTGATATCCAGCTGGGATGCCACACTATAAGGTCCCATGGT
genomic: ATCTGAACCAGCGCAGTTTATCAGGGACGTAGCACTGTAGCAGTGAGTTGgtgagctctc ... tctgttctagGGGAGGATGCCTGATATCCAGCTGGGATGCCACACTATAAGGTCCCATGGT