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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACAACTGATTCTAACACAGCAATAACAATGCTTCCTGAACCACACGAGGATGAAATACAGTTCATATTGGATGCAATCTCTGACTATCTTAATGTTCAGgtgtgtttgcatatatgcaatcctttttccacatgctgaaataatgtcgtaaagttcttatgctattgtagtgttgtttcacatattttcatcttgtatt...

Basic information

species Zea mays
transcript GRMZM2G446108_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G446108_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os04g14790.1 (Oryza sativa), 5'ss of exon 3
AACAACTGATTCTAACACAGCAATAACAATGCTTCCTGAACCACACGAGGATGAAATACAGTTCATATTGGATGCAATCTCTGACTATCTTAATGTTCAGgt----gtgtttgcatatatgcaatcc--------tttttccaca-tgctgaaataatgtcgtaaagttcttatgctattgtagtgttgtttcacatattttcatcttgtatt
 ||||| || ||||  ||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| |||| ||| |||||||| ||||||||    |||||||||| |||| |||          || ||  ||  ||  |||| ||  | |||||||| || |          |  |||||  ||| ||             
TACAACCGACTCTAGTACAGCAATAACAATGCTTCCTGAACCACATGAGGATGAGATACAGTTCATATTAGATGCTATCTGTGATTATCTTAACGTTCAGgtttgtgtgtttgcatttatgtaatgtacagtaatttatttgacgctgtcgaaaaaaaatagtaaagtttttctttctgaaatatagtgtttttcatgtt-------------

upper sequence: GRMZM2G446108_T03 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA20G32390.1 (Glycine max), 5'ss of exon 3
AACAACTGATTCTAACAC-AGCAATAACAATGCTTCCTGAACCACACGAGGATGAAATACAGTTCATATTGGATGCAATCTCTGACTATCTTAATGTTCAGgtgtgtt-----tgcatatatgcaatcctttttccacatgctgaaataatgtcgtaaagttcttatgctattgtagtgttgtttcacatattttcatcttgtatt
 || || ||||||| ||| |||| ||   || ||||| |||||||| || ||||||||||| || ||||||||||| |||||||| || ||||||||| | || ||||     |||  ||||    | || |||  ||| | |    |     | || | ||  |     ||||  |||  |      | |   | ||  ||| | 
GACTACAGATTCTAGCACTAGCATTACTTAT-CTTCCAGAACCACATGAAGATGAAATACAATTTATATTGGATGCCATCTCTGATTACCTTAATGTTAAAgtatgttattcctgccaatatagcttactatttttacacgttttt-tccccccttatattttctgaagaattggtgtggaga---gaacacaatgatgatgttt-

upper sequence: GRMZM2G446108_T03 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA10G35170.1 (Glycine max), 5'ss of exon 3
AACAACTGATTCTAACAC-AGCAATAACAATGCTTCCTGAACCACACGAGGATGAAATACAGTTCATATTGGATGCAATCTCTGACTATCTTAATGTTCAGgtgtgtttgcatatatgcaatcctttttccacatgctgaaataatgtcgtaaagttcttatgctat-tgtagtgttgtttc--acatattttcatcttgtatt---
 || || |||||||  || |||| ||   || ||||| |||||||| || ||||||||||| || ||||||||||| ||||| || || ||||||||| | || ||||   ||  |||| |   | | |    |   | | | | | |  |    |||||||  | | || ||  ||| |    ||| ||    ||  |||  |   
GACTACAGATTCTAGTACTAGCATTACTTAT-CTTCCAGAACCACATGAAGATGAAATACAATTTATATTGGATGCCATCTCCGATTACCTTAATGTTAAAgtatgtt---attcatgccaatatatcttactacttttacacattatttt---tttcttatattttctgaagaattggtgtggacagatcacaatgatgtgatgtt

upper sequence: GRMZM2G446108_T03 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA02G28000.1 (Glycine max), 5'ss of exon 3
AACAACTGATTCTAACACAGCAATAACAATGCTTCCTGAACCACACGAGGATGAAATACAGTTCATATTGGATGCAATCTCTGACTATCTTAATGTTCAGgtgtgtt-tgcatatatgca-atcctttttccacatgctgaaataatgtcgtaaagttcttatgctattgtagtgttgtttcacatattttcatcttgtatt---
||| || ||||| |||||    || ||  | ||||| |||||||| || ||||||||||| || ||||||||||| |||||||| || ||||||||| | || || | | | |     || |  |  |||  |    |   | |  |    |    |  || |||  ||  |        | | ||  |  |||  | ||||   
AACTACAGATTCCAACACTAGCATTACCTTTCTTCCAGAACCACATGAAGATGAAATACAATTTATATTGGATGCCATCTCTGATTACCTTAATGTTAAAgtatgatattcttgccaacacaggcaatttttaagcacaatagttttccttt----tctttctgcctttaaatgcagaaattaaatgatcccatgct-tattaca

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89106200|gb|DY576417.1|DY576417
EST:     ATGAAATACAGTTCATATTGGATGCAATCTCTGACTATCTTAATGTTCAG                         GTAAGGCGTTCAGATGTTCTTTCTGCCTGGAGTGGTATACGTCCTTTGGCG
genomic: ATGAAATACAGTTCATATTGGATGCAATCTCTGACTATCTTAATGTTCAGgtgtgtttgc ... cattcattagGTAAGGCGTTCAGATGTTCTTTCTGCCTGGAGTGGTATACGTCCTTTGGCG
EST: gi|22491283|gb|BU051206.1|BU051206
EST:     ATGAAATACAGTTCATATTGGATGCAATCTCTGACTATCTTAATGTTCAG                         GTAAGGCGTTCAGATGTTCTTTCTGCCTGGAGTGGTATACGTCCTTTGGCG
genomic: ATGAAATACAGTTCATATTGGATGCAATCTCTGACTATCTTAATGTTCAGgtgtgtttgc ... cattcattagGTAAGGCGTTCAGATGTTCTTTCTGCCTGGAGTGGTATACGTCCTTTGGCG