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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTGATGGGCATGTGGAGCAGCGAGCCGTTCAGGGTCGACAGCGGCAGCGCCCACGCCACCAGCGCGTCCACCGTCAACACCAAGCTGGAGGAGACAAGGgttagtgctcgtcgttcctcctcctccttcttcttttctttcttgcatatatatatatgttgtcctctgatctacgtcatcaccgcgcccgcccatgatgtcgctgcag

Basic information

species Zea mays
transcript GRMZM2G445575_T02
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148967197|gb|EE018389.2|EE018389
EST:     CCCACGCCACCAGCGCGTCCACCGTCAACACCAAGCTGGAGGAGACAAGG                         TTAGAAGACGACGCACAGGTAGCACTTGAGCCGGCAAGAAGTACGGAGCAG
genomic: CCCACGCCACCAGCGCGTCCACCGTCAACACCAAGCTGGAGGAGACAAGGgttagtgctc ... gtcgctgcagTTAGAAGACGACGCACAGGTAGCACTTGAGCCGGCAAGAAGTACGGAGCAG
EST: gi|94477975|gb|EB706933.1|EB706933
EST:     CCCACGCCACCAGCGCGTCCACCGTCAACACCAAGCTGGAGGAGACAAGG                         TTAGAAGACGACGCACAGGTAGCACTTGAGCCGGCAAGAAGTACGGAGCAG
genomic: CCCACGCCACCAGCGCGTCCACCGTCAACACCAAGCTGGAGGAGACAAGGgttagtgctc ... gtcgctgcagTTAGAAGACGACGCACAGGTAGCACTTGAGCCGGCAAGAAGTACGGAGCAG
EST: gi|148955465|gb|EC901061.2|EC901061
EST:     CCCACGCCACCAGCGCGTCCACCGTCAACACCAAGCTGGAGGAGACAAGG                         TTAGAAGACGACGCACAGGTAGCACTTGAGCCGGCAAGAAGTACGGAGCAG
genomic: CCCACGCCACCAGCGCGTCCACCGTCAACACCAAGCTGGAGGAGACAAGGgttagtgctc ... gtcgctgcagTTAGAAGACGACGCACAGGTAGCACTTGAGCCGGCAAGAAGTACGGAGCAG
EST: gi|148999148|gb|EE036061.2|EE036061
EST:     CCCACGCCACCAGCGCGTCCACCGTCAACACCAAGCTGGAGGAGACAAGG                         TTAGAAGACGACGCACAGGTAGCACTTGAGCCGGCAAGAAGTACGGAGCAG
genomic: CCCACGCCACCAGCGCGTCCACCGTCAACACCAAGCTGGAGGAGACAAGGgttagtgctc ... gtcgctgcagTTAGAAGACGACGCACAGGTAGCACTTGAGCCGGCAAGAAGTACGGAGCAG
EST: gi|37426426|gb|CF650965.1|CF650965
EST:     CCCACGCCACCAGCGCGTCCACCGTCAACACCAAGCTGGAGGAGACAAGG                         TTAGAAGACGACGCAC
genomic: CCCACGCCACCAGCGCGTCCACCGTCAACACCAAGCTGGAGGAGACAAGGgttagtgctc ... gtcgctgcagTTAGAAGACGACGCAC
EST: gi|149079352|gb|EE168328.2|EE168328
EST:     CCCACGCCACCAGCGCGTCCACCGTCAACACCAAGCTGGAGGAGACAAGG                         TTAGAAGACGACGCACAGGTAGCACTTGAGCCGGCAAGAAGTACGGAGCAG
genomic: CCCACGCCACCAGCGCGTCCACCGTCAACACCAAGCTGGAGGAGACAAGGgttagtgctc ... gtcgctgcagTTAGAAGACGACGCACAGGTAGCACTTGAGCCGGCAAGAAGTACGGAGCAG
EST: gi|148933922|gb|EC877905.2|EC877905
EST:     CCCACGCCACCAGCGCGTCCACCGTCAACACCAAGCTGGAGGAGACAAGG                         TTAGAAGACGACGCACAGGTAGCACTTGAGCCGGCAAGAAGTACGGAGCAG
genomic: CCCACGCCACCAGCGCGTCCACCGTCAACACCAAGCTGGAGGAGACAAGGgttagtgctc ... gtcgctgcagTTAGAAGACGACGCACAGGTAGCACTTGAGCCGGCAAGAAGTACGGAGCAG
EST: gi|148969929|gb|EE020834.2|EE020834
EST:     CCCACGCCACCAGCGCGTCCACCGTCAACACCAAGCTGGAGGAGACAAGG                         TTAGAAGACGACGCACAGGTAGCACTTGAGCCGGCAAGAAGTACGGAGCAG
genomic: CCCACGCCACCAGCGCGTCCACCGTCAACACCAAGCTGGAGGAGACAAGGgttagtgctc ... gtcgctgcagTTAGAAGACGACGCACAGGTAGCACTTGAGCCGGCAAGAAGTACGGAGCAG
EST: gi|74235598|gb|DT643512.1|DT643512
EST:     CCCACGCCACCAGCGCGTCCACCGTCAACACCAAGCTGGAGGAGACAAGG                         TTAGAAGACGACGCACAGGTAGCACTTGAGCCGGCAAGAAGTACGGAGCAG
genomic: CCCACGCCACCAGCGCGTCCACCGTCAACACCAAGCTGGAGGAGACAAGGgttagtgctc ... gtcgctgcagTTAGAAGACGACGCACAGGTAGCACTTGAGCCGGCAAGAAGTACGGAGCAG
EST: gi|149000175|gb|EE037312.2|EE037312
EST:     CCCACGCCACCAGCGCGTCCACCGTCAACACCAAGCTGGAGGAGACAAGG                         TTAGAAGACGACGCACAGGTAGCACTTGAGCCGGCAAGAAGTACGGAGCAG
genomic: CCCACGCCACCAGCGCGTCCACCGTCAACACCAAGCTGGAGGAGACAAGGgttagtgctc ... gtcgctgcagTTAGAAGACGACGCACAGGTAGCACTTGAGCCGGCAAGAAGTACGGAGCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGTGATGGGCATGTGGAGCAGCGAGCCGTTCAGGGTCGACAGCGGCAGCGCCCACGCCACCAGCGCGTCCACCGTCAACACCAAGCTGGAGGAGACAAGGgttagtgctcgtcgttcctcctcctccttcttcttttctttcttgcatatatatatatgttgtcctctgatctacgtcatcaccgcgcccgcccatgatgtcgctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA