1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ATATCTGGAAGCCCGTAACTGGAATGTTGCTAAGTCGAGAAAAATGCTGGAAGAAAGTCTCAAGTGGAGGGCAGCTTACAAGCCAGAGGATATTCGTTGGgtaaatttgttcttccttttttgccatccatgcattgctctatttttgttcctctgaagcctagccaagtcactaaacatcatattaactgccttttag
species | Zea mays |
transcript | GRMZM2G443453_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AAGAAAGTCTCAAGTGGAGGGCAGCTTACAAGCCAGAGGATATTCGTTGG CCTGATGTTTCTGTCGAAGCGGAAACAGGTAAAATGTACAGGGCAAGTTTCEST: gi|89761846|gb|DY689697.1|DY689697
genomic: AAGAAAGTCTCAAGTGGAGGGCAGCTTACAAGCCAGAGGATATTCGTTGGgtaaatttgt ... tgccttttagCCTGATGTTTCTGTCGAAGCGGAAACAGGTAAAATGTACAGGGCAAGTTTC
EST: AAGAAAGTCTCAAGTGGAGGGCAGCTTACAAGCCAGAGGATATTCGTTGG CCTGATGTTTCTGTCGAAGCGGAAACAGGTAAAATGTACAGGGCAAGTTTC
genomic: AAGAAAGTCTCAAGTGGAGGGCAGCTTACAAGCCAGAGGATATTCGTTGGgtaaatttgt ... tgccttttagCCTGATGTTTCTGTCGAAGCGGAAACAGGTAAAATGTACAGGGCAAGTTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATCTGGAAGCCCGTAACTGGAATGTTGCTAAGTCGAGAAAAATGCTGGAAGAAAGTCTCAAGTGGAGGGCAGCTTACAAGCCAGAGGATATTCGTTGGgtaaatttgttcttccttttttgccatccatgcattgctctatttttgttcctctgaagcctagccaagtcactaaacatcatattaactgccttttag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT