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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATGGTGGATCACGTGCTGCTGAGTATTTGAGGGAGCACTTGTTTGAGAACCTTCTCAAGCACCCTGATTTCTTGACGGATACAAAGCTTGCTATAAgtatttcttctcttcagctgtactgtagacttcctgttgccattattgttggtgctacaacctgtttatctgctaaacttgaatttaaaacag

Basic information

species Zea mays
transcript GRMZM2G442404_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G442404_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g15594.1 (Oryza sativa), 5'ss of exon 3
GTCATGGTGGATCACGTGCTGCTGAGTATTTGAGGGAGCACTTGTTTGAGAACCTTCTCAAGCACCCTGATTTCTTGACGGATACAAAGCTTGCTATAAgtatttcttctcttcagctgta----ctgtagacttcctgttgccattattgttggtgctacaacctgtt--tatctgctaaactt--gaatttaaaacag--------------
||||||| ||| ||||||||||||||||||||| |||  | ||||| || || ||||| || |||||||| ||| |||| |||||||||||||| ||||||| || |||||||    | |      |  ||   ||   |  || || || |    | | | |    ||  ||||| || |||||  |||   ||||                 
GTCATGGAGGACCACGTGCTGCTGAGTATTTGAAGGAAAATTTGTTCGAAAATCTTCTGAAACACCCTGAGTTCCTGACAGATACAAAGCTTGCCATAAgtaatttttctctttgattcttacctttccagttctctgttcaccttttttttaaaggttgctaatgattattatcttctcaacttttgaaaaaaaaatcaaaacataacaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78179208|gb|DV549581.1|DV549581
EST:     GAACCTTCTCAAGCACCCTGATTTCTTGACGGATACAAAGCTTGCTATAA                         GCGAAACATATCAGAAAACCGATACAGATTTCTTGGAATCGGAAGCAAGTG
genomic: GAACCTTCTCAAGCACCCTGATTTCTTGACGGATACAAAGCTTGCTATAAgtatttcttc ... tttaaaacagGCGAAACATATCAGAAAACCGATACAGATTTCTTGGAATCGGAAGCAAGTG
EST: gi|71428856|gb|DR809906.1|DR809906
EST:     AAGCTTGCTATAA                         GCGAAACATTTCAAAAAACCGATACAGATTT-TTGGAATCGGAAGCAAGTG
genomic: AAGCTTGCTATAAgtatttcttc ... tttaaaacagGCGAAACATATCAGAAAACCGATACAGATTTCTTGGAATCGGAAGCAAGTG
EST: gi|8103065|gb|AW927729.1|AW927729
EST:     GAACCTTCTCAAGCACCCTGATTTCTTGACGGATACAAAGCTTGCTATAA                         GCGAAACATATCAGAAAACCGATACAGATTTCTTGGAATCGGAAGCAAGTG
genomic: GAACCTTCTCAAGCACCCTGATTTCTTGACGGATACAAAGCTTGCTATAAgtatttcttc ... tttaaaacagGCGAAACATATCAGAAAACCGATACAGATTTCTTGGAATCGGAAGCAAGTG
EST: gi|32931838|gb|CF036650.1|CF036650
EST:     GAACCTTCTCAAGCACCCTGATTTCTTGACGGATACAAAGCTTGCTATAA                         GCGAAACATATCAGAAAACCGATACAGATTTCTTGGAATCGGAAGCAAGTG
genomic: GAACCTTCTCAAGCACCCTGATTTCTTGACGGATACAAAGCTTGCTATAAgtatttcttc ... tttaaaacagGCGAAACATATCAGAAAACCGATACAGATTTCTTGGAATCGGAAGCAAGTG