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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATGAGTATGCCTGTACAAAGTATCCAAGTAACTTGGAATTAATGATGGGGCTTTTTAATTGCTATGTTCGAGAGTACTCATACGTGAAACAACAGCAGgtataatgatggtacttacattgggtacttacactgctaccactttcattgctacttaatttacattccttttgatatcttatttctatgcttggcctccttgcctggtatcttttgcag

Basic information

species Zea mays
transcript GRMZM2G442057_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G442057_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os05g27870.1 (Oryza sativa), 5'ss of exon 3
CTATGAGTATGCCTGTACAAAGTATCCAAGTAACTTGGAATTAATGATGGGGCTTTTTAATTGCTATGTTCGAGAGTACTCATACGTGAAACAACAGCAGgtataatgatggtacttacattgggtacttacactgctaccactttcattgctacttaatttacattccttttgatatcttatttctatgcttggcctccttgcctggtatcttttgcag
|||||||||||| ||||||||||| || | ||||||||| ||||||||||| |||||||||||||||||  ||||||||||||| ||||| || || || |||| |||||                | ||   ||||||           | |  |||||||   ||  || || | |||| || | || |||| || || ||  | ||||||| |||||
CTATGAGTATGCTTGTACAAAGTACCCCAATAACTTGGAGTTAATGATGGGCCTTTTTAATTGCTATGTCAGAGAGTACTCATATGTGAAGCAGCAACATgtatgatgat----------------atttttcctgcta-----------gtttgttaattt---ttttttgtgctttcttgtt-caattcttgaccaccctgttttgtatcttctgcag

upper sequence: GRMZM2G442057_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA11G29640.1 (Glycine max), 5'ss of exon 4
CTATGAGTATGCCTGTACAAAGTATCCAAGTAACTTGGAATTAATGATGGGGCTTTTTAATTGCTATGTTCGAGAGTACTCATACGTGAAACAACAGCAGgtataatgatggtacttacattgggtacttacactgctaccactttcattgctacttaatttacattccttttgatatcttatttctatgcttggcctccttgcctggtatcttttgcag
 |||||  |||||||||  || |  ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||  ||||| ||||| ||||| |  |||| ||    |  |    |  |||  ||  |     ||  |||  || ||| |||| |   |||   || |     || | |  |||||                        
TTATGAACATGCCTGTAGTAAATTCCCAAGTAACTTGGAACTAATGATGGGGCTGTTTAATTGCTATGTTCGAGAGTACTCATTTGTGAAGCAACAACAGgt-ttgtgattgtgtgaatgtc---tgtttatgctatt-----ttatatttttatttacttta-acaacttcacattttgctattgtctaattggcag----------------------