1 5' 3' | 2 5' 3' | 3 5' 3' |
GAATCTGGGTTTCTCTACGAGCAGCGGAATCCATATCTGATAGAATACAAAAGTTACGGGACGAGGAACTGCAGCCACAACTCGTCGAGCTGTTGCAGGGgtaagccatcctccgtttgtatgtatgcaatttccatttcaaatcggtactgatgaattggctgcctctctgcag
species | Zea mays |
transcript | GRMZM2G440831_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AAGTTACGGGACGAGGAACTGCAGCCACAACTCGTCGAGCTGTTGCAGGG CTTTACAAAATCTTGGAAAATAATGGTGGACTCGCATGAAACCCAGAGGCAEST: gi|26558650|gb|CA830885.1|CA830885
genomic: AAGTTACGGGACGAGGAACTGCAGCCACAACTCGTCGAGCTGTTGCAGGGgtaagccatc ... ctctctgcagCTTTACAAAATCTTGGAAAATAATGGTGGACTCGCATGAAACCCAGAGGCA
EST: AAGTTACGGGACGAGGAACTGCAGCCACAACTCGTCGAGCTGTTGCAGGG CTTTACAAAATCTTGGAAAATAATGGTCGACTCGCATGAAACCCAGAGGCAEST: gi|87155625|gb|DY400414.1|DY400414
genomic: AAGTTACGGGACGAGGAACTGCAGCCACAACTCGTCGAGCTGTTGCAGGGgtaagccatc ... ctctctgcagCTTTACAAAATCTTGGAAAATAATGGTGGACTCGCATGAAACCCAGAGGCA
EST: AAGTTACGGGACGAGGAACTGCAGCCACAACTCGTCGAGCTGTTGCAGGG CTTTACAAAATCTTGGAAAATAATGGTCGACTCGCATGAAACCCAGAGGCAEST: gi|78116820|gb|DV535207.1|DV535207
genomic: AAGTTACGGGACGAGGAACTGCAGCCACAACTCGTCGAGCTGTTGCAGGGgtaagccatc ... ctctctgcagCTTTACAAAATCTTGGAAAATAATGGTGGACTCGCATGAAACCCAGAGGCA
EST: AAGTTACGGGACGAGGAACTGCAGCCACAACTCGTCGAGCTGTTGCAGGG CTTTACAAAATCTTGGAAAATAATGGTGGACTCGCATGAAACCCAGAGGCAEST: gi|30270747|gb|BQ280273.1|BQ280273
genomic: AAGTTACGGGACGAGGAACTGCAGCCACAACTCGTCGAGCTGTTGCAGGGgtaagccatc ... ctctctgcagCTTTACAAAATCTTGGAAAATAATGGTGGACTCGCATGAAACCCAGAGGCA
EST: AAGTTACGGGACGAGGAACTGCAGCCACAACTCGTCGAGCTGTTGCAGGG CTTTACAAAATCTTGGAAAATAATGGTCGACTCGCATGAAACCCAGAGGCAEST: gi|21331755|gb|BQ487136.1|BQ487136
genomic: AAGTTACGGGACGAGGAACTGCAGCCACAACTCGTCGAGCTGTTGCAGGGgtaagccatc ... ctctctgcagCTTTACAAAATCTTGGAAAATAATGGTGGACTCGCATGAAACCCAGAGGCA
EST: AAGTTACGGGACGAGGAACTGCAGCCACAACTCGTCGAGCTGTTGCAGGG CTTTACAAAATCTTGGAAAATAATGGTCGACTCGCATGAAACCCAGAGGCAEST: gi|22472567|gb|BU037047.1|BU037047
genomic: AAGTTACGGGACGAGGAACTGCAGCCACAACTCGTCGAGCTGTTGCAGGGgtaagccatc ... ctctctgcagCTTTACAAAATCTTGGAAAATAATGGTGGACTCGCATGAAACCCAGAGGCA
EST: AAGTTACGGGACGAGGAACTGCAGCCACAACTCGTCGAGCTGTTGCAGGG CTTTACAAAATCTTGGAAAATAATGGTCGACTCGCATGAAACCCAGAGGCA
genomic: AAGTTACGGGACGAGGAACTGCAGCCACAACTCGTCGAGCTGTTGCAGGGgtaagccatc ... ctctctgcagCTTTACAAAATCTTGGAAAATAATGGTGGACTCGCATGAAACCCAGAGGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATCTGGGTTTCTCTACGAGCAGCGGAATCCATATCTGATAGAATACAAAAGTTACGGGACGAGGAACTGCAGCCACAACTCGTCGAGCTGTTGCAGGGgtaagccatcctccgtttgtatgtatgcaatttccatttcaaatcggtactgatgaattggctgcctctctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT