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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCTTATGGATGTCAAACCATGGGACGATGAGACTGATATGAAGAAGCTGGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcactttcaatgctacagattttcctgtatttaaccatttgacataaacttgtaatacaacaacgcttgtgtatgtattaaccatttgacataaacttgtaatacag

Basic information

species Zea mays
transcript GRMZM2G439201_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G439201_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os07g46750.1 (Oryza sativa), 5'ss of exon 5
GTCCTTATGGATGTCAAACCATGGGACGATGAGACTGATATGAAGAAGCTGGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcactttcaatgctacagattttcctgtatttaaccatttgacataaacttgtaatacaac-aacgcttgtgtatgtattaaccatttgacataaacttgtaatacag
|||||  |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||| || |||||||||||| ||   || |         || |     ||| |||    |||   |||   ||  | | ||||| ||| |   |   | | | ||                          
GTCCTGTTGGATGTCAAACCATGGGACGACGAGACTGATATGAAGAAGTTGGAGGAGGCTGTCCGCAGTGTGCAGATGGAGGGTCTCACCTGGGGAGCATgtgaggagctatttccttcttagctagaagtgtctttgctgattgtccattt-ctaatcacacaactaacacacat-cgtttttaaattgcag--------------------

upper sequence: GRMZM2G439201_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA13G04050.1 (Glycine max), 5'ss of exon 5
GTCCTTATGGATGTCAAACCATGGGACGATGAGACTGATATGAAGAAGCTGGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcactttcaatgctacagattttcctgtatttaaccatttgacataaacttgtaatacaacaacgcttgtg-tatgtattaaccat-ttgacataaacttgtaatacag
|| ||  | || || || || ||||| ||||| || || |||||||||||||| |||||||| ||||||||  |||||   |||||    ||||||||||||| ||     |   |     || ||||||||||  || |  ||     |||  |    |||  |  | |        |||| ||     | |||||| |              
GTTCTGCTTGACGTTAAGCCTTGGGATGATGAAACAGACATGAAGAAGCTGGAAGAGGCTGTTCGCAGTGTTGAGATGCCTGGTCTATTGTGGGGAGCATgtatgttgaactttgt----tagtttttcctgtaaatatctgttgtgtttaacttcaatatattatgatgtgaacaacatgttttgttggtgttgacacag-------------

upper sequence: GRMZM2G439201_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA02G44460.2 (Glycine max), 5'ss of exon 5
GTCCTTATGGATGTCAAACCATGGGACGATGAGACTGATATGAAGAAGCTGGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcactttcaatgctacagattttcctgtatttaaccatttgacataaacttgtaatacaacaacgcttgtgtatgtattaaccatttgacataaacttgtaatacag
    || | ||||| || || ||||| |||||||| || |||||||||||||| ||| ||||||||||| |  |||||   ||| |    ||||||||||||| ||     |   |   ||| | ||| ||    ||    ||||||   |      |  |   | ||      | ||| ||  ||   | |    | || | ||||     
----TTCTCGATGTTAAGCCTTGGGATGATGAGACCGACATGAAGAAGCTGGAAGAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCATGTATgttgaaat---tttcacaaacttttct---cttgcatatttgatgcatttaatttctttcaaaattaccatttatctaa-aatgttcttgtttcaattggtaaag---

upper sequence: GRMZM2G439201_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA14G04350.1 (Glycine max), 5'ss of exon 5
GTCCTTATGGATGTCAAACCATGGGACGATGAGACTGATATGAAGAAGCTGGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcactttcaatgctacagattttcctgtatttaac-catttgacataaacttgtaatacaacaacgcttgtgta-tgtattaaccatttgacataaacttgtaatacag
|||||| | ||||| || || |||||||||||||| || |||||||||||||| ||||||||||| ||| |  |||||   ||| |    ||||||||||||| |  | ||||      | | | |||    ||||| |  ||||| || |   |||  || |  | |     | |  | ||| |    || |||  | |              
GTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCGACATGAAGAAGCTGGAAGAGGCTGTCCGTAGTATTGAGATGCCTGGTTTATTGTGGGGAGCATgtatgaaattttc------ataaacttttgcatatttgatgcatttaactt---ctttcaaaattatattttatctaaaatgtttgtttcaattggtacag-------------

upper sequence: GRMZM2G439201_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA13G04050.3 (Glycine max), 5'ss of exon 5
GTCCTTATGGATGTCAAACCATGGGACGATGAGACTGATATGAAGAAGCTGGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcactttcaatgctacagattttcctgtatttaaccatttgacataaacttgtaatacaacaacgcttgtg-tatgtattaaccat-ttgacataaacttgtaatacag
    |  | || || || || ||||| ||||| || || |||||||||||||| |||||||| ||||||||  |||||   |||||    ||||||||||||| ||     |   |     || ||||||||||  || |  ||     |||  |    |||  |  | |        |||| ||     | |||||| |              
----TGCTTGACGTTAAGCCTTGGGATGATGAAACAGACATGAAGAAGCTGGAAGAGGCTGTTCGCAGTGTTGAGATGCCTGGTCTATTGTGGGGAGCATGTATgttgaactttgt----tagtttttcctgtaaatatctgttgtgtttaacttcaatatattatgatgtgaacaacatgttttgttggtgttgacacag-------------

upper sequence: GRMZM2G439201_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA02G44460.1 (Glycine max), 5'ss of exon 5
GTCCTTATGGATGTCAAACCATGGGACGATGAGACTGATATGAAGAAGCTGGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcactttcaatgctacagattttcctgtatttaaccatttgacataaacttgtaatacaacaacgcttgtgtatgtattaaccatttgacataaacttgtaatacag
|||||| | ||||| || || ||||| |||||||| || |||||||||||||| ||| ||||||||||| |  |||||   ||| |    ||||||||||||| ||     |   |   ||| | ||| ||    ||    ||||||   |      |  |   | ||      | ||| ||  ||   | |    | || | ||||     
GTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCGACATGAAGAAGCTGGAAGAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCATgtatgttgaaat---tttcacaaacttttct---cttgcatatttgatgcatttaatttctttcaaaattaccatttatctaa-aatgttcttgtttcaattggtaaag---

upper sequence: GRMZM2G439201_T01 (Zea mays), 5'ss of exon 3
lower sequence: AT5G12110.1 (Arabidopsis thaliana), 5'ss of exon 5
GTCCTTATGGATGTCAAACCATGGGACGATGAGACTGATATGAAGAAGCTGGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcactttcaatgctacagattttcctgtatttaaccatttgacataaacttgtaatacaacaacgcttgtgtatgtattaaccatttgacataaacttgtaatacag
|| ||  |||| || ||||||||||| ||||| || || ||||||||| | || || ||||| || ||||| ||||||   ||||| || |||||||| |||||||||           |   || ||  | |||||  |       |  ||  || |  |        | || ||    | | | | |||||    |              
GTGCTACTGGAAGTAAAACCATGGGATGATGAAACCGACATGAAGAAGTTAGAAGAAGCTGTTCGTAGTGTTCAGATGCCAGGTCTTACATGGGGAGCTTgtaagtca-----------aagaatgtttatctattttgcacaagagctcaagtttttttttttttttggtttctg---atgtgagcaatttgttgcag-------------

upper sequence: GRMZM2G439201_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv06s0009g02410.t01 (Vitis vinifera), 5'ss of exon 5
GTCCTTATGGATGTCAAACCATGGGACGATGAGACTGATATGAAGAAGCTGGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaag---tcactttcaatgctacagattttcctgtatttaaccatttgacataaac--ttgtaatacaacaacgcttgtgtatgta-ttaaccatttgacataaacttgtaatacag-----------
|| ||| ||||||| ||||| ||||| |||||||| || |||||||||||||| |||||||| |||||| |  |||||   || ||    ||||||||||||| |   | | | | |||   |      ||  |        | |   || ||  ||  || | |||     | |||    |    |  | |    |||    | | ||||  ||  |           
GTTCTTTTGGATGTGAAACCTTGGGATGATGAGACAGACATGAAGAAGCTGGAAGAGGCTGTTCGCAGTATTGAGATGCCAGGCCTCTTGTGGGGAGCATgtatggtttgattattaatttaaacaccctttttccccccttcaaaccgaaattgaccattcttatattcttatgctgaccttgacaactgaatgcttggttaatagttgtgctatggatttgttgcag

upper sequence: GRMZM2G439201_T01 (Zea mays), 5'ss of exon 3
lower sequence: PP1S145_172V6.1 (Physcomitrella patens), 5'ss of exon 4
GTCCTTATGGATGTCAAACCATGGGACGATGAGACTGATATGAAGAAGCTGGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcactttcaatgctacagattttcctg------------tattta----accatttgacataaacttgtaatacaacaacgcttgtgtatgt-attaaccatttg-----acataaacttgt--aatacag
 |  | ||||| ||||| |||||||||||||||||||| |||  |||| ||||||||  ||| ||   |||||| ||||||||||||  |||||| || ||||||| | ||| |  | ||| | |   |  |            |||||     ||  | |  | ||  ||| | |  | | ||   | || ||||| | | | |||         ||| |  |||    || |||
ATTGTCATGGACGTCAAGCCATGGGACGATGAGACTGACATGGTGAAGTTGGAGGAGTGTGTTCGATCTGTCCAAATGGAGGGTCTGCTTTGGGGTGCCTgtaagtgatttttacggttacgggtcacctgggctgtctgaagatatttccagtacagtgtatcgtacgcttttgactctaaaattgtagtttatgtcaatgagcatgcactcatgcatgattttgctcgatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18166501|gb|BM336340.1|BM336340
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|14529297|gb|BI096430.1|BI096430
EST:     GGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|211191970|gb|FL164733.1|FL164733
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|15353007|gb|BI502618.1|BI502618
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|22819207|gb|BU499297.1|BU499297
EST:     GGAGGAGGCTGTCCGCAGTGTCCCGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|18170740|gb|BM340580.1|BM340580
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|32937091|gb|CF041910.1|CF041910
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCGTGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|5740011|gb|AI947701.1|AI947701
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATNCGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|18177768|gb|BM378978.1|BM378978
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|211191968|gb|FL164731.1|FL164731
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGT-CCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|32916009|gb|CF020821.1|CF020821
EST:     GGAGGAGGCTGTCCCCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATCCGGCATCAAGAAGATGACTATCATGTTGC
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|6918862|gb|AW400392.1|AW400392
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|211191966|gb|FL164729.1|FL164729
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|211191967|gb|FL164730.1|FL164730
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|19822750|gb|BQ048774.1|BQ048774
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|76290060|gb|DV029628.1|DV029628
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|211404135|gb|FL441006.1|FL441006
EST:     TGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTAGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: TGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|18166242|gb|BM336081.1|BM336081
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|15589956|gb|BI674572.1|BI674572
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|32936228|gb|CF041040.1|CF041040
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|15426968|gb|BI542790.1|BI542790
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|17929848|gb|BM266808.1|BM266808
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|4610033|gb|AI600872.1|AI600872
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|78024595|gb|DV492982.1|DV492982
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|37396765|gb|CF635676.1|CF635676
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|18166471|gb|BM336310.1|BM336310
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|78117318|gb|DV535705.1|DV535705
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|50325697|gb|CO520823.1|CO520823
EST:     GGAGGAGGGTGTCCGCAGTGGCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGGTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|211191969|gb|FL164732.1|FL164732
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|6578066|gb|AW244203.1|AW244203
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|60357565|gb|DN224538.1|DN224538
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|18163368|gb|BM333207.1|BM333207
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|4646632|gb|AI491461.2|AI491461
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|211477958|gb|FL457110.1|FL457110
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|33104035|gb|CF063995.1|CF063995
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|17930839|gb|BM267799.1|BM267799
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|84976715|gb|DW475137.1|DW475137
EST:     GGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGTATCAAGAAGATGACTATCATGTTGA
genomic: GGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|8103258|gb|AW927908.1|AW927908
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|33098078|gb|CF058038.1|CF058038
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGCCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|15353041|gb|BI502652.1|BI502652
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|78082369|gb|DV510781.1|DV510781
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|22549268|gb|BU101469.1|BU101469
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|6637144|gb|AW261416.1|AW261416
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCCTTATGGATGTCAAACCATGGGACGATGAGACTGATATGAAGAAGCTGGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcactttcaatgctacagattttcctgtatttaaccatttgacataaacttgtaatacaacaacgcttgtgtatgtattaaccatttgacataaacttgtaatacag

- - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA