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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGGCTGCCGACGGTCATCGGCGGCTCCTACGCGTTCGTCATCCCGATAATGGCCATCATCCAGGACCCGTCGCTTTCTGGGATACCCGACGGTCATGAGgtgagcagcagcagttgcctgtgactgtccgttctgcctgttgcttctgatggaggcggtggcgtgtgtgtaatctgaaagtttttttccccatctgtggttgagcag

Basic information

species Zea mays
transcript GRMZM2G437859_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G437859_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g55500.4 (Oryza sativa), 5'ss of exon 3
CCGGCTGCCGACGGTCATCGGCGGCTCCTACGCGTTCGTCATCCCGATAATGGCCATCATCCAGGACCCGTCGCTTTCTGGGATACCCGACGGTCATGAGgtgagcagcagcag----------ttgcctgtgactgtccgttctgcctgttgcttctgatggaggcggt--ggcgtgtgtg-------taatctga-----aagtttttttccccatctgtggttgagcag
 || ||||| ||||| |||||||| ||||||||||||||  ||||||||||||||||||| |||||| | |||||  | |  ||||||||||  || ||||| ||||| |||||          ||   | || |  ||| | |  ||  | || |||  ||     | |  ||||||| ||       | |||||      |  | | | || |  ||| |   |||||||
GCGCCTGCCCACGGTGATCGGCGGATCCTACGCGTTCGTGGTCCCGATAATGGCCATCATACAGGACTCATCGCTCGCCGCCATACCCGACGACCACGAGgtaagcag-agcaggcggacgctcttctttctgtccatccatccgtccaatcgcctctactgttttagattaggcgtgtctgatcacaatcatctgctgttcatctctctctctctctctctctctgagcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149001123|gb|EE038382.2|EE038382
EST:     TGGCCATCATCCAGGACCCGTCGCTTTCTGGGATACCCGACGGTCATGAG                         AGGTTCCTCGAGACCATGAAAGCCATACAGGGGGCACTGATAGTG
genomic: TGGCCATCATCCAGGACCCGTCGCTTTCTGGGATACCCGACGGTCATGAGgtgagcagca ... ggttgagcagAGGTTCCTCGAGACCATGAAGGCCATACAGGGGGCACTGATAGTG
EST: gi|71439895|gb|DR820945.1|DR820945
EST:     TGGCCATCATCCAGGACCCGTCGCTTTCTGGGATACCCGACGGTCATGAG                         AGGTTCCTCGAGACCATGAAGGCCATACAGGGGGCACTGATAGTGTCCTCC
genomic: TGGCCATCATCCAGGACCCGTCGCTTTCTGGGATACCCGACGGTCATGAGgtgagcagca ... ggttgagcagAGGTTCCTCGAGACCATGAAGGCCATACAGGGGGCACTGATAGTGTCCTCC
EST: gi|74240437|gb|DT648351.1|DT648351
EST:     TGGCCATCATCCAGGACCCGTCGCTTTCTGGGATACCCGACGGTCATGAA                         AGGTTCCTCGAGACCATGAAGGCCATACAGG
genomic: TGGCCATCATCCAGGACCCGTCGCTTTCTGGGATACCCGACGGTCATGAGgtgagcagca ... ggttgagcagAGGTTCCTCGAGACCATGAAGGCCATACAGG
EST: gi|91049745|gb|EB160163.1|EB160163
EST:     TGGCCATCATCCAGGACCCGTCGCTTTCTGGGATACCCGACGGTCATGAG                         AGGTTCCTCGAGACCATGAAGGCCATACAGGGGGCACTGATAGTGTCCTCC
genomic: TGGCCATCATCCAGGACCCGTCGCTTTCTGGGATACCCGACGGTCATGAGgtgagcagca ... ggttgagcagAGGTTCCTCGAGACCATGAAGGCCATACAGGGGGCACTGATAGTGTCCTCC
EST: gi|211102809|gb|FL069927.1|FL069927
EST:     TGGCCATCATCCAGGACCCGTCGCTTTCTGGGATACCCGACGGTCATGAG                         AGGTTCCTCGAGACCATGAAGGGCATACAGGGGGCACTGATAGTGTCCTCC
genomic: TGGCCATCATCCAGGACCCGTCGCTTTCTGGGATACCCGACGGTCATGAGgtgagcagca ... ggttgagcagAGGTTCCTCGAGACCATGAAGGCCATACAGGGGGCACTGATAGTGTCCTCC