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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGGAGGGTACTTCAATGCAATAATGAGCTTCCCACAAAATTACCCAAACAACCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgttagctttttattagtgaaaattgtatttatttacttcatctgcagttatgttttctgacatcatgcataatatttgagcaaacgccagtctatcctga...

Basic information

species Zea mays
transcript GRMZM2G434519_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G434519_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g62244.3 (Oryza sativa), 5'ss of exon 1
--TGATGGAGGGTACTTCAATGCAATAATGAGCTTCCCACAAAATTACCCAAACAACCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgttagctttttattagtgaaaattgtatttatttacttcatctgcagttatgttttctgacatcatgcataatatttgagcaaacgccagtctatcctga
  ||||||||| ||||| ||||||||||||||||| ||||| ||||| || ||||  || ||| | |||||||||||||| ||||||||||||||||||||| ||||||   | | || || ||  || | | |    |  |   |   ||  ||| | |||    |||||||||| |  |||  |||||          
AGTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttcc-tcattgtaactt-catgtttctgtaactccatgatccataattt-taacaca--gcataatatt-ggtcaattgccag----------

upper sequence: GRMZM2G434519_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g62244.1 (Oryza sativa), 5'ss of exon 3
TGATGGAGGGTACTTCAATGCAATAATGAGCTTCCCACAAAATTACCCAAACAACCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgttagctttttattagtgaaaattgtatttatttacttcatctgcagttatgttttctgacatcatgcataatatttgagcaaacgccagtctatcctga
||||||||| ||||| ||||||||||||||||| ||||| ||||| || ||||  || ||| | |||||||||||||| ||||||||||||||||||||| ||||||   | | || || ||  || | | |    |  |   |   ||  ||| | |||    |||||||||| |  |||  |||||          
TGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttcc-tcattgtaactt-catgtttctgtaactccatgatccataattt-taacaca--gcataatatt-ggtcaattgccag----------

upper sequence: GRMZM2G434519_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv08s0007g00120.t01 (Vitis vinifera), 5'ss of exon 3
TGATGGAGGGTACTTCAATGCAATAATGAGCTTCCCACAAAATTACCCAAACAACCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgttagctttttattagtgaaaattgtatttatttacttca-tctgcagtta---tgttttctgacatcatgcataatatttgagcaaacgccagtctatcctga
 ||||| || |  |||||||| || ||||| || ||||  ||||| || ||||  || |||||||| || |||||||| || ||||||||||| |||||||| ||| ||||   |   |  |  || ||| ||  | | | |    ||       | |||||    |    ||     |    ||||  |||          
CGATGGGGGCTTTTTCAATGCTATTATGAGTTTTCCACCCAATTATCCCAACAGTCCTCCATCAGTGAGGTTTACCTCGGATATGTGGCATCCTAATGgttaacttcttatgcctctcatatacatatatatatatgaatttctcattggagcactctctgatgctaattgtacctacttcttaaactgcag----------