Sequence
atgc intronic sequence ATGC exonic sequenceTTTCCAATCTTGGTGGTTTCAGAAACATGGTTGACAAAAGGACAGCACTCGAGAATTTGGATATGATCCTATTGTGCCTTGATGAAATTGTTGATGGAGGgtaaatccttatcttactacatacatgatattagggcttcttttcttgttccctttattgtgtacatttattattcttcctttgctctgaaataatctga...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G431350_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os05g38610.1 (Oryza sativa), 5'ss of exon 4
TTTCCAATCTTGGTGGTTTCAGAAACATGGTTGACAAAAGGACAGCACTCGAGAATTTGGATATGATCCTATTGTGCCTTGATGAAATTGTTGATGGAGGgtaaatccttatcttactacatacatgatattagggcttcttttctt-----gttc--cctttattgtgtacatttattattcttcctttgctctgaaataatctga
||| | || |||||||| ||||||||||| ||| ||||| | |||||||||||||| ||||||||||||||||||||||||||||| ||| ||| || || || | |||| || ||| | || || | | ||||| || | | |||||| | ||||
----------------------AAATAACGTCGACAAAAGAACAGCACTCGAAAATCTGGATCTCATCCTATTGTGCCTCGATGAAATTGTTGATGGAGGgtaaatcctagtctcactggatgtcaaatgttcttattcctttcgtttgtatgtttggctttcatggcacgc-tttataatcggttgtctgctct--agtaat----
upper sequence: GRMZM2G431350_T03 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA15G13190.3 (Glycine max), 5'ss of exon 4
TTTCCAATCTTGGTGGTTTCAGAAACATGGTTGACAAAAGGACAGCACTCGAGAATTTGGATATGATCCTATTGTGCCTTGATGAAATTGTTGATGGAGGgtaa-----atccttatcttactacatacatgatattagggcttcttttcttgttccctttattgtgtacatttat-tattcttcctttgctctgaaataatctga
| || || ||||| | | |||||| ||||| |||||| | || ||||||||| ||||||||||||||||||| ||||| || || || || | || || || | || | | ||||| ||| | | | || | | | || ||| | | ||
----------------------AGGCAATGTAGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATTGTGCATTGATGAAATTGTTGATGGCGGgtatgctatatgctattcatatgaaatttatctccttcag--ttgtgtgtttgtttgcttctctaaatcttctcatgcacttccctcttcctccaatacaaa----
upper sequence: GRMZM2G431350_T03 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA13G42470.1 (Glycine max), 5'ss of exon 4
TTTCCAATCTTGGTGGTTTCAGAAACATGGTTGACAAAAGGACAGCACTCGAGAATTTGGATATGATCCTATTGTGCCTTGATGAAATTGTTGATGGAGGgtaaatccttatcttactacatacatgatattagggcttcttttcttgttccctttattgtgtacatttattattcttcctttgctctgaaataatctga
|||| ||||||||||| || || || || ||||| | || || || ||||||||||| ||||||||||||||||| | | | | ||| || |||| | ||| || | || || | | || || || ||||| | ||||
----------------------GAACAATGTTGACAAAAGAGAGGCGCTGGAAAACTTGGACCTCATTCTTTTATGCCTTGATGAGATTGTTGATGGAGGgta--tgcatctgttattagttacagtttgtta----tttgcattgcgtaaaagttttgatctattttctaaatatttcctc--ccttgaag--------
upper sequence: GRMZM2G431350_T03 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA09G02270.3 (Glycine max), 5'ss of exon 4
TTTCCAATCTTGGTGGTTTCAGAAACATGGTTGACAAAAGGACAGCACTCGAGAATTTGGATATGATCCTATTGTGCCTTGATGAAATTGTTGATGGAGGgtaaatccttatcttactacatacatgatattagggcttcttttcttgttcccttta--ttgtgtacatttattattcttcctttgctctgaaataatctga---
| || || ||||| | | |||||| ||||| |||||| | || ||||||||| | ||||||||||||||||| ||||| | | ||| | |||| ||| ||||||| |||| ||| || | | || | | || | | || || ||
----------------------AGGCAATGTGGACAAGAAGGAAGCACTAGAGAACTTGGATCTCATTCTATTGTGCATAGATGAAATTGTTGATGGCGGgtatgctata----tgctattcatatgaaatttat-cttctttagttgtgtttgttagcttctcaaaatcttctcttgcgcttcccacttgttccaacctacaaa
upper sequence: GRMZM2G431350_T03 (Zea mays), 5'ss of exon 3
lower sequence: Vv09s0002g01710.t01 (Vitis vinifera), 5'ss of exon 4
TTTCCAATCTTGGTGGTTTCAGAAACATGGTTGACAAAAGGACAGCACTCGAGAATTTGGATATGATCCTATTGTGCCTTGATGAAATTGTTGATGGAGGgtaaatccttatcttactacataca-tgatattagggcttcttttcttgttccctttattgtgtacatttattattcttcctttgctctgaaataatctga
|||| ||||||| ||| ||||| ||||| |||||| | || || | ||||||||||| ||||||||||||||||| | ||| | | | | | | | ||| | ||||| || | | ||| | | ||| | | | |
----------------------GAACAACATTGACAAGAGGGAGGCACTTGAGAACTTGGATCTCATTCTCCTATGCCTTGATGAGATTGTTGATGGAGGgtatgcaatatgcttctcatgttctctcgtcctttaaaatatttcaaaatgcccttgtttacacatgaacttaatttaggatcttctcatagcaagtgcg-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|166543611|gb|EG303722.1|EG303722EST: ATTTGGATATGATCCTATTGTGCCTTGTATGAAATTGTTGATGGAGG GATTGTACTTGAAACAGAAGGAAGAGAGATAGCTGAAAAGGTGTCTGG
genomic: ATTTGGATATGATCCTATTGTGCCTTG-ATGAAATTGTTGATGGAGGgtaaatcctt ... gattacacagGATTGTACTTGAAACAGAAGGAAGAGAGATAGCTGAAAAGGTGTCTGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTCCAATCTTGGTGGTTTCAGAAACATGGTTGACAAAAGGACAGCACTCGAGAATTTGGATATGATCCTATTGTGCCTTGATGAAATTGTTGATGGAGGgtaaatccttatcttactacatacatgatattagggcttcttttcttgttccctttattgtgtacatttattattcttcctttgctctgaaataatctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG