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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTGGAGATAAACTTAGTGACTTACCCAAATGTTGTTGATGCCATTCTTGCTAATGgtatgttcagtcattatgatcgccctcgtattgcttagctgtgtgaaaaggctgggttgtacttgcgag

Basic information

species Zea mays
transcript GRMZM2G430947_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G430947_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA11G06720.1 (Glycine max), 5'ss of exon 17
GTTTTGGAGATAAACTTAGTGACTTACCCAAATGTTGTTGATGCCATTCTTGCTAATGgtatgttcagtcattatgatcgccctcgtattgcttagctgtgtgaaaaggctgggttgtacttgcgag------------------------------------------------------------------------------------------
                                   || |||||| ||  | || ||||| |||||||||||||||||| |||| |||||||   | || ||||||||||| ||  ||| | | || |                                                                                          
-----------------------------------TGCTGATGCTATATTGGCCAATGGCATGTTCAGTCATTATGATTGCCCACGTATTGGACAACTATGTGAAAAGGCGGGCCTGTTCATACGGGCTCTTCAGgttctttgcttcttaagttctgatgactgtataatgttctctttttagaatatttcttgaaccttgtctgtgtattgtgcag

upper sequence: GRMZM2G430947_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 16
GTTTTGGAGATAAACTTAGTGACTTACCCAAATGTTGTTGATGCCATTCTTGCTAATGgtatgttcagtcattatgatcgccctcgtattgcttagctgtgtgaaaaggctgggttgtacttgcgag----------------------------------------------------------------------------------------------------
                                   || |||||| ||| | |||||||| |||||||| |||||||| || |||||||||||| | || |||||||| |||||  | ||  |||||                                                                                                     
-----------------------------------TGCTGATGCAATTTTGGCTAATGGAATGTTCAGCCATTATGACCGTCCTCGTATTGCTCAACTTTGTGAAAAAGCTGGTCTTTATGTGCGATCTTTGCAAgtaatgactcaccaaatgtgttttattcttactggttttcttatttaacccaaaggccttctcttttattgattacattatttttggtgcag

upper sequence: GRMZM2G430947_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA02G42560.1 (Glycine max), 5'ss of exon 17
GTTTTGGAGATAAACTTAGTGACTTACCCAAATGTTGTTGATGCCATTCTTGCTAATGgtatgttcagtcattatgatcgccctcgtattgcttagctgtgtgaaaaggctgggttgtacttgcgag----------------------------------------------------------------------------------------------------
                                   || |||||| ||  | |||||||| |||||||| |||||||| || |||||||||||  |||| || ||||| || ||  | ||  ||||||                                                                                                    
-----------------------------------TGCTGATGCAATATTGGCTAATGGCATGTTCAGCCATTATGACCGTCCTCGTATTGCCCAGCTTTGCGAAAAAGCGGGCCTTTATGTGCGAGCTTTGCAAgtaaggactctccaaatgtgttttattctcgcactttctctatgttagtcttaaagtcaaaccctttgttgattgcattattcttggtgcag

upper sequence: GRMZM2G430947_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 16
GTTTTGGAGATAAACTTAGTGACTTACCCAAATGTTGTTGATGCCATTCTTGCTAATGgtatgttcagtcattatgatcgccctcgtattgcttagctgtgtgaaaaggctgggttgtacttgcgag----------------------------------------------------------------------------------------------------
                                   || |||||| ||| | |||||||| |||||||| |||||||| || |||||||||||| | || |||||||| |||||  | ||  ||||||                                                                                                    
-----------------------------------TGCTGATGCAATTTTGGCTAATGGAATGTTCAGCCATTATGACCGTCCTCGTATTGCTCAACTTTGTGAAAAAGCTGGTCTTTATGTGCGAGCTTTGCAAgtaatgactcaccaaatgtgttttattattactggttttcttatttaacccaaaagccttctcttttactgattacactatttttggtgcag

upper sequence: GRMZM2G430947_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA14G06340.2 (Glycine max), 5'ss of exon 17
GTTTTGGAGATAAACTTAGTGACTTACCCAAATGTTGTTGATGCCATTCTTGCTAATGgtatgttcagtcattatgatcgccctcgtattgcttagctgtgtgaaaaggctgggttgtacttgcgag----------------------------------------------------------------------------------------------------
                                   || |||||| ||  | |||||||| |||||||| |||||||| || |||||||||||  | || |||||||| |||||  | ||  ||||||                                                                                                    
-----------------------------------TGCTGATGCAATATTGGCTAATGGCATGTTCAGCCATTATGACCGTCCTCGTATTGCCCAACTTTGTGAAAAAGCTGGCCTTTATGTGCGAGCTTTGCAAgtaaggactctccaaatgtgttttattcttgcactttctctatgttaatcttaaaatcaaacccttaattgattgcattattcttggtgcag

upper sequence: GRMZM2G430947_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA01G38580.1 (Glycine max), 5'ss of exon 17
GTTTTGGAGATAAACTTAGTGACTTACCCAAATGTTGTTGATGCCATTCTTGCTAATGgtatgttcagtcattatgatcgccctcgtattgcttagctgtgtgaaaaggctgggttgtacttgcgag------------------------------------------------------------------------------------------
                                   || |||||| ||  | || ||||| ||||||||||||||||||||||| |||||||   | || ||||||||||||||  ||| | | || |                                                                                          
-----------------------------------TGCTGATGCTATATTGGCCAATGGCATGTTCAGTCATTATGATCGCCCACGTATTGGACAACTATGTGAAAAGGCTGGCCTGTTCATACGGGCTCTTCAGgttctttgcttcttaagttctgatgacagtataatgatctcttgttagaatatttcttgaaccgtgtctgtatattgtgcag

upper sequence: GRMZM2G430947_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA02G39360.1 (Glycine max), 5'ss of exon 17
GTTTTGGAGATAAACTTAGTGACTTACCCAAATGTTGTTGATGCCATTCTTGCTAATGgtatgttcagtcattatgatcgccctcgtattgcttagctgtgtgaaaaggctgggttgtacttgcgag------------------------------------------------------------------------------------------
                                   || |||||| ||  | || ||||| ||||| ||||||||||| || || || |||||| |||| ||||||||||||||  | | | | || |                                                                                          
-----------------------------------TGCTGATGCTATATTGGCCAATGGCATGTTTAGTCATTATGACCGTCCACGGATTGCTCAGCTTTGTGAAAAGGCTGGCCTTTTCATTCGGGCTCTTCAGgttctttgcttttattcttatgactgactgtaatttcttgtcagaataatttcttgaaccttcttgtgtgttgcttatgcag

upper sequence: GRMZM2G430947_T01 (Zea mays), 5'ss of exon 3
lower sequence: AT3G11130.1 (Arabidopsis thaliana), 5'ss of exon 17
GTTTTGGAGATAAACTTAGTGACTTACCCAAATGTTGTTGATGCCATTCTTGCTAATGgtatgttcagtcattatgatcgccctcgtattgcttagctgtgtgaaaaggctgggttgtacttgcgag-------------------------------------------------------------------------------------------------
                                    | |||||| ||  | || ||||| |||||||| |||||||| || |||||| ||||| |||| ||||||||||||||  | ||| | | |                                                                                                  
-----------------------------------GGCTGATGCAATCTTAGCAAATGGGATGTTCAGCCATTATGACCGGCCTCGTGTTGCTCAGCTTTGTGAAAAGGCTGGACTTTACATCCAATCTTTAAAGgtttttgctcaatgtcttctttaatattcttggcctaatagatgtatttttttttcccctctaacttcgtttccttttgctttgtgcag

upper sequence: GRMZM2G430947_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 17
GTTTTGGAGATAAACTTAGTGACTTACCCAAATGTTGTTGATGCCATTCTTGCTAATGgtatgttcagtcattatgatcgccctcgtattgcttagctgtgtgaaaaggctgggttgtacttgcgag-------------------------------------------------------------------------------------------------
                                    |  ||||| ||  | |||||||||||||| ||||| ||||||||||| ||||||||  |||| |||||||| |||||  | ||  ||||||                                                                                                 
-----------------------------------CGCAGATGCTATATTAGCTAATGGTATGTTTAGTCACTATGATCGCCCACGTATTGCACAGCTCTGTGAAAAAGCTGGTCTTTATGTGCGAGCCCTTCAGgtataatggtttctcactatctgattgatgaactttatttcacagacctttgattgtttcttggattaaatgattcatctcttatgcag