Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAAATTAATCAGAATCGAGTGCAGGGTGCCAGAGTATGGATGGACAACGCAGAAGGTGTTCCATTTTCTAAACTTCCTTGTGAATGGCGgtgagccagcatttgtgccgcttgcattacttagcttctgctaggtgtttgatttggtggactgatcaatgtaaatgctctattcctgctcatag

Basic information

species Zea mays
transcript GRMZM2G426306_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G426306_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g02850.2 (Oryza sativa), 5'ss of exon 2
GTCAAATTAATCAGAATCGAGTGCAGGGTGCCAGAGTATGGATGGACAACGCAGAAGGTGTTCCATTTTCTAAACTTCCTTGTGAATGGCGgtgagccagcatttgtgccgcttgcattacttagcttctgctaggtgtttgatttggtggactgatcaatgtaaatgctctattcctgctcatag
||| |||| ||||||||||| || || || || ||||| |||||||| || |||||||||||||||||  | |||||  |||||||||| |||||||   | ||||  |   |  || | |||   |  | |  | |   |  || ||        |  |||    ||  ||  |     |||   
GTCCAATTGATCAGAATCGAATGTAGAGTACCTGAGTACGGATGGACGACACAGAAGGTGTTCCATTTCATGAACTTTATTGTGAATGGAGgtgagcatacttttgcact-ttgccactgcttcattgatacatgctagctttttcggaacttcagtttatgattttggactggtttgtttcag--

upper sequence: GRMZM2G426306_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA08G09640.1 (Glycine max), 5'ss of exon 2
GTCAAATTAATCAGAATCGAGTGCAGGGTGCCAGAGTATGGATGGACAACGCAGAAGGTGTTCCATTTTCTAAACTTCCTTGTGAATGGCGgtgag-------ccagcatttgtgcc-gcttgcattacttagcttctgctaggtgtttgat--ttggtggactgat----caatgtaaatgctctattcctgctcatag
||  ||||| |  ||||  | || || ||||| |||||||| ||||| ||||||||||| || || ||||| || ||| |||||||||| |||  |       | |  |||| |  |   ||   ||  | | ||  |  ||  ||||| ||  |||  |   |  |    ||| ||  ||||||  |      |   ||
GTTCAATTAGTTCGAATACAATGGAGAGTGCCGGAGTATGGTTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGGgtttgtatcattctaatatttttttctaattatttttttaatctatttgtatttgtttcatgattgacgtttttttggtgcaaagttgatgctcgttctggttttgcag

upper sequence: GRMZM2G426306_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv01s0010g01740.t01 (Vitis vinifera), 5'ss of exon 2
GTCAAATTAATCAGAATCGAGTGCAGGGTGCCAGAGTATGGATGGACAACGCAGAAGGTGTTCCATTTTCTAAACTTCCTTGTGAATGGCGgtgagccagcatttgtgccgcttgcattacttagcttctgctaggtgtt-tgatttggtggac-tgatcaatgtaaatgctctattcctgctcatag
||  || |  |  | ||  | |  || || ||||||||||| ||||| ||||||||||||||||| ||||| || ||||| |||||||| |||      | || |     | |   | | | ||  || ||||| |  || | || |  ||    |  | | || | ||| |||  | |       ||
GTTCAACTGGTTCGGATACAATTGAGAGTCCCAGAGTATGGTTGGACCACGCAGAAGGTGTTCCACTTTCTCAATTTCCTGGTGAATGGGGgt----ttgtatctaa---gttcataattcatactttgtgctatggattataatcttttgtgtatttttattgaatatggtctcatgcgttctgcag

upper sequence: GRMZM2G426306_T01 (Zea mays), 5'ss of exon 3
lower sequence: EFJ30530 (Selaginella moellendorffii), 5'ss of exon 2
GTCAAATTAATCAGAATCGAGTGCAGGGTGCCAGAGTATGGATGGACAACGCAGAAGGTGTTCCATTTTCTAAACTTCCTTGTGAATGGCGgtgagccagcatttgtgccgcttgcattacttagcttctgctaggtgtttgatttggtggactgatcaatgtaaatgctctattcctgctcatag
 |  || | ||| | ||||||    | || || |||||||| ||||| ||||||||||| |||||||| || || |||||||| ||||| ||||||     |||  | |  |||  | |  || | ||   ||    | ||| |                                          
ATACAACTCATCCGGATCGAGATTCGCGTCCCCGAGTATGGCTGGACGACGCAGAAGGTCTTCCATTTGCTGAATTTCCTTGTAAATGGAGgtgag-----attcttccatcttagaat-tttggattgatctcttcgcttgctag----------------------------------------

upper sequence: GRMZM2G426306_T01 (Zea mays), 5'ss of exon 3
lower sequence: EFJ32437 (Selaginella moellendorffii), 5'ss of exon 2
GTCAAATTAATCAGAATCGAGTGCAGGGTGCCAGAGTATGGATGGACAACGCAGAAGGTGTTCCATTTTCTAAACTTCCTTGTGAATGGCGgtgagccagcatttgtgccgcttgcattacttagcttctgctaggtgtttgatttggtggactgatcaatgtaaatgctctattcctgctcatag
||  |||| ||  |||||||| | ||||| || |||||||||||||| |  |||||| | |||||||| || |||||| | |||||||| |||| |  ||| |    || |  |     |||  | |||    | ||  ||  ||     |                                   
GTGCAATTGATTCGAATCGAGCGGAGGGTCCCGGAGTATGGATGGACGATCCAGAAGCTCTTCCATTTGCTCAACTTCGTCGTGAATGGAGgtgcgt-agcttgctcgctggctat-cgact--gtttcattcacgtactt--ttctacag-----------------------------------

upper sequence: GRMZM2G426306_T01 (Zea mays), 5'ss of exon 3
lower sequence: EFJ23006 (Selaginella moellendorffii), 5'ss of exon 2
GTCAAATTAATCAGAATCGAGTGCAGGGTGCCAGAGTATGGATGGACAACGCAGAAGGTGTTCCATTTTCTAAACTTCCTTGTGAATGGCGgtgagccagcatttgtgccgcttgcattacttagcttctgctaggtgt-ttgatttggtggactgatcaatgtaaatgctctattcctgctcatag
 |  || | ||| | ||||||    | || || |||||||| ||||| ||||||||||| |||||||| || || |||||||| ||||| ||||||     |||       ||| |||     | |||  | | | | | ||  |||| | |                                   
ATACAACTCATCCGGATCGAGATTCGCGTCCCCGAGTATGGCTGGACCACGCAGAAGGTCTTCCATTTGCTGAATTTCCTTGTAAATGGAGgtgag-----att-------cttccatcttagaactttggattgatctcttcgtttgctag-----------------------------------

upper sequence: GRMZM2G426306_T01 (Zea mays), 5'ss of exon 3
lower sequence: EFJ15891 (Selaginella moellendorffii), 5'ss of exon 2
GTCAAATTAATCAGAATCGAGTGCAGGGTGCCAGAGTATGGATGGACAACGCAGAAGGTGTTCCATTTTCTAAACTTCCTTGTGAATGGCGgtgagccagcatttgtgccgcttgcattacttagcttctgctaggtgtttgatttggtggactgatcaatgtaaatgctctattcctgctcatag
 || || |  | |||||  |   | ||||||| |||||||| |||||||||||||| ||||||||| | || || ||| |||| ||||| |||||   |   ||  |     ||   |  || | | |||  |     || |  ||  | ||                                  
ATCCAACTCGTTAGAATACAAATCCGGGTGCCGGAGTATGGCTGGACAACGCAGAAAGTGTTCCATCTCCTCAATTTCTTTGTAAATGGAGgtgaa--aagtttcatatttttt---tctctcatcctcttgttttgattcgtcttcttcgatcag------------------------------

upper sequence: GRMZM2G426306_T01 (Zea mays), 5'ss of exon 3
lower sequence: EFJ33253 (Selaginella moellendorffii), 5'ss of exon 2
GTCAAATTAATCAGAATCGAGTGCAGGGTGCCAGAGTATGGATGGACAACGCAGAAGGTGTTCCATTTTCTAAACTTCCTTGTGAATGGCGgtgagccagcatttgtgccgcttgcattacttagcttctgctaggtgtttgatttggtggactgatcaatgtaaatgctctattcctgctcatag
 || || |  | |||||  |   | ||||||| |||||||| |||||||||||||| ||||||||| | || || ||| |||| ||||| |||||   |   |||   |   ||   |  || | | |||  |     || |  ||  | ||                                  
ATCCAACTCGTTAGAATACAAATCCGGGTGCCGGAGTATGGCTGGACAACGCAGAAAGTGTTCCATCTCCTCAATTTCTTTGTAAATGGAGgtga---aaagttt---cattttttttctctcatcctcttgttttgattcgtcttcctcgatcag------------------------------

upper sequence: GRMZM2G426306_T01 (Zea mays), 5'ss of exon 3
lower sequence: EFJ20811 (Selaginella moellendorffii), 5'ss of exon 2
GTCAAATTAATCAGAATCGAGTGCAGGGTGCCAGAGTATGGATGGACAACGCAGAAGGTGTTCCATTTTCTAAACTTCCTTGTGAATGGCGgtgagccagcatttgtgccgcttgcattacttagcttctgctaggtgtttgatttggtggactgatcaatgtaaatgctctattcctgctcatag
||  |||| ||  |||||||| | ||||| || |||||||||||||| |  |||||| | |||||||| || |||||| | |||||||| |||| |  ||| | |  || |  |     |||  | |||    | ||  |   ||     |                                   
GTGCAATTGATTCGAATCGAGCGGAGGGTCCCGGAGTATGGATGGACGATCCAGAAGCTCTTCCATTTGCTCAACTTCGTCGTGAATGGAGgtgcgt-agcttattcgctggctat-cgact--gtttcattcacgtact--gttctacag-----------------------------------