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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCACATTAGGCAAATTGCGCATGAATCTAGTGGGGAAATGCCCTATGGAGGGGGCCGACAGCCAGCAGTTTTGAGAACATTTAGCCAGAGGCTTAGCAGgtttgtggtcgtgttcatgtgttctcatttaccatttgtgctgtttgaatttattgccaggacccatcacatggcacttctaacttctttaatgtaatttacag

Basic information

species Zea mays
transcript GRMZM2G423337_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G423337_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g43930.2 (Oryza sativa), 5'ss of exon 10
GTCACATTAGGCAAATTGCGCATGAATCTAGTGGGGAAATGCCCTATGGAGGGGGCCGACAGCCAGCAGTTTTGAGAACATTTAGCCAGAGGCTTAGCAGgtttgtggtcgtgttcatgtgttctcatttaccatttgtgctgtttgaatttattgccaggacccatcacatggcacttctaacttctttaatgtaatttacag
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||| ||||||||||  || ||| | ||||||                  || | ||||     |      ||||||  | ||  |   ||||| || |  |||  |||| |||
GTCACATTAGGCAAATTGCACATGAATCAAGTGGGGAAATGCCCTATGGAGGGGGCCGTCAGCCAGCAGTTCTGAGAACATTTAGTCAGAGGCTAAGCAGgtttgcagtagtgcttatgtgtc----------------actatgtgaaagagat------acccat-gcgtgctatggctaacgtcctcgatgctatttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211034587|gb|FL160210.1|FL160210
EST:     GGGGGCCGACAGCCAGCAGTTTTGAGAACATTTAGCCAGAGGCTTAGCAG                         GGGTTTCAATGATGCTGTCAATGGGTTTCCAGATGACGGTTGGTCACTGAT
genomic: GGGGGCCGACAGCCAGCAGTTTTGAGAACATTTAGCCAGAGGCTTAGCAGgtttgtggtc ... taatttacagGGGTTTCAATGATGCTGTCAATGGGTTTCCAGATGACGGTTGGTCACTGAT