1 5' 3' | 2 5' 3' | 3 5' 3' |
CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttgagtcttatttttttcagttcactatgaagatcgattgtgtattctctattcttgtatctaacctgagatgtgtttacctatttcag
species | Zea mays |
transcript | GRMZM2G422581_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTTEST: gi|60291769|gb|DN190008.1|DN190008
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTTEST: gi|19058036|gb|BM736703.1|BM736703
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: TAAGGAAATGATCCAATCTCATTGTCCCAGCGCCTGCTGAGGACATTCAG ATCCTGAGATGTGGTCCTCCTCCGATGAEST: gi|37381869|gb|CF627838.1|CF627838
genomic: TAAGGAAATGATCCAATCTCATTGT-CCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGA
EST: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTTEST: gi|76290843|gb|DV030411.1|DV030411
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTTEST: gi|19822090|gb|BQ048114.1|BQ048114
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTTEST: gi|211184106|gb|FL465367.1|FL465367
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTTEST: gi|211135586|gb|FL028680.1|FL028680
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTTEST: gi|19822109|gb|BQ048133.1|BQ048133
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: GATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTTEST: gi|88751068|gb|DY535209.1|DY535209
genomic: GATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTTEST: gi|166680168|gb|EG164832.1|EG164832
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: GGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACAATTCAG ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCEST: gi|50331967|gb|CO527093.1|CO527093
genomic: GGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGAC-ATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGC
EST: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTTEST: gi|26455934|gb|CA827517.1|CA827517
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTTEST: gi|78117349|gb|DV535736.1|DV535736
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTTEST: gi|19769752|gb|BQ034473.1|BQ034473
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTTEST: gi|76288677|gb|DV028245.1|DV028245
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
EST: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG ATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
genomic: CTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttg ... cctatttcagATCCTGAGATGTGGTCCTCCTCCGATGAACAAGGCCATGGCTGCACACCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAGgtgaatcttgagtcttatttttttcagttcactatgaagatcgattgtgtattctctattcttgtatctaacctgagatgtgtttacctatttcag
- - - - - - - - - - - - - - - - - - - AAGGAA