Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgtaccctcctgcatgcactgttcgtttcttcatgattgctttcatccaatttatgacaatgtgaataatgcag

Basic information

species Zea mays
transcript GRMZM2G419694_T05
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G419694_T05 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os04g53240.4 (Oryza sativa), 5'ss of exon 2
AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgtaccct------cctgcatgcactgttcgtttcttcatgattgctttcatccaatttatgaca-atgtga-ataatgcag
||| ||||||  |||||||||||||||||||||| ||||||  |||||||||||| |||||||||  |         |     |    ||||   ||| |  || ||  |||  || ||||| | ||| || | |  ||||| ||
AGAGGAGGCAGGCTGAGGCTAACCGTATCAGAGAAAAGTACAGTGACAGAATTCCTgtaagcttgctcttcatattgctcagttatgttgtttccttcattgtggtttttttgctctaatttgttacatatctaatgtaatgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33100992|gb|CF060952.1|CF060952
EST:     GCAATCTGAGGCTAACCGTATCAGAGAGAAGGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GCAATCTGAGGCTAACCGTATCAGAGAGAAG-TACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|15057145|gb|BI361117.1|BI361117
EST:     GGCCATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|76287758|gb|DV027326.1|DV027326
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|211258766|gb|FL031018.1|FL031018
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|60352182|gb|DN219155.1|DN219155
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|14244237|gb|BG842211.2|BG842211
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAAAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|28986825|gb|CB351328.1|CB351328
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|211258765|gb|FL031017.1|FL031017
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|211027787|gb|FL306180.1|FL306180
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|28986861|gb|CB351346.1|CB351346
EST:     CGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: CGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|18176526|gb|BM351459.1|BM351459
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|211027791|gb|FL306184.1|FL306184
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|211030233|gb|FL306195.1|FL306195
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|211027797|gb|FL306190.1|FL306190
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|211002077|gb|FL119250.1|FL119250
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAG
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAG
EST: gi|211258760|gb|FL031012.1|FL031012
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|211027796|gb|FL306189.1|FL306189
EST:     GGCAATCTGAGGCTAACTGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|18166449|gb|BM336288.1|BM336288
EST:     GGCAATCTGAGGCTAACCGTATCAGAAAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGGAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|211027786|gb|FL306179.1|FL306179
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|211002075|gb|FL119248.1|FL119248
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGGAGTGATATTCCTGACATCGACAAGAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGG-AGTGATATTCCTGACATCGACAAGAA
EST: gi|33103944|gb|CF063904.1|CF063904
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|211030232|gb|FL306194.1|FL306194
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|211002073|gb|FL119246.1|FL119246
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACA
EST: gi|15426911|gb|BI542733.1|BI542733
EST:     GGCCATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGGCAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|17929998|gb|BM266958.1|BM266958
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|91871992|gb|EB401949.1|EB401949
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|60358602|gb|DN225575.1|DN225575
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|18170724|gb|BM340564.1|BM340564
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|60339197|gb|DN206170.1|DN206170
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|91871993|gb|EB401950.1|EB401950
EST:     GCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCC-TGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|17931360|gb|BM268326.1|BM268326
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|211496223|gb|FL382412.1|FL382412
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|4226208|gb|AI396315.1|AI396315
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|17929854|gb|BM266814.1|BM266814
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|17931560|gb|BM268520.1|BM268520
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|211027785|gb|FL306178.1|FL306178
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|211258763|gb|FL031015.1|FL031015
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|211258768|gb|FL031020.1|FL031020
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|211027792|gb|FL306185.1|FL306185
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|88749526|gb|DY533667.1|DY533667
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAAAAGTACCCTGACAGATTTCCA                         GTGATTGTTGAAAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|211027798|gb|FL306191.1|FL306191
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGATAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|211004848|gb|FL119251.1|FL119251
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCYGAGAGGAGTGATATTCCTGACATCGAC
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGAC
EST: gi|18174890|gb|BM350278.1|BM350278
EST:     GTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|211027790|gb|FL306183.1|FL306183
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|18168345|gb|BM338185.1|BM338185
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|211030231|gb|FL306193.1|FL306193
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|45847736|gb|CN071679.1|CN071679
EST:     GGCAATCTGAGGCTACCCGTATCAGAGAGAAGTCCCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|211027794|gb|FL306187.1|FL306187
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCT-ACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|211027793|gb|FL306186.1|FL306186
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|211027788|gb|FL306181.1|FL306181
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|18167465|gb|BM337304.1|BM337304
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|16922807|gb|BM075799.1|BM075799
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|15057263|gb|BI361235.1|BI361235
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|60349765|gb|DN216738.1|DN216738
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|17931323|gb|BM268289.1|BM268289
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|211002074|gb|FL119247.1|FL119247
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGAC
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGAC
EST: gi|78079144|gb|DV507556.1|DV507556
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|15177541|gb|BI398480.1|BI398480
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|16922901|gb|BM075893.1|BM075893
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|60353565|gb|DN220538.1|DN220538
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|91048098|gb|EB158516.1|EB158516
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|211027789|gb|FL306182.1|FL306182
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
EST: gi|60352183|gb|DN219156.1|DN219156
EST:     GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA                         GTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA
genomic: GGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgt ... aataatgcagGTGATTGTTGAGAAGGCTGAGAGGAGTGATATTCCTGACATCGACAAGAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCAgtaagcttgtaccctcctgcatgcactgttcgtttcttcatgattgctttcatccaatttatgacaatgtgaataatgcag

- - - - - - - - - - - - - - - -  AGAAGT