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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTTGTATAGAATTTGCTACTTCAAATCAGCATTTGATGGAGAATCAAAGCTCCAAATACTTAACGGGAACTATCGCATCCCAGAATTGCCGAAGTACAgttcttctattacaacacttatcaaagacatgcttaattcttctccagatgccagaccggacatcacacaggcaagggctttgcttgattggccattcacttccatgaacttaggttggtcttaattagtgcatacaccatgaaacgaacacataagagatcttctgtttcaatgttgatgataaatgttctgttttag

Basic information

species Zea mays
transcript GRMZM2G416684_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G416684_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os09g10720.1 (Oryza sativa), 5'ss of exon 4
CTCTTGTATAGAATTTGCTACTTCAAATCAGCATTTGATGGAGAATCAAAGCTCCAAATACTTAACGGGAACTATCGCATCCCAGAATTGCCGAAGTACAgttcttctattacaacacttatcaaagacatgcttaattcttctccagatgccagaccggacatcacacaggcaagggctttgcttgattggccattcacttccatgaacttaggttggtcttaattagtgcatacaccatgaaacgaacacataagagatcttctgtttcaatgttgatgataaatgttctgttttag
                                                                       |||||| |||||||| || || |||||||||||  | |||||||  || ||||||||||||||| | ||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||| | || | |||   | |  ||| || |||||||||||  |  |  |  |  || | |  || |||
-----------------------------------------------------------------------CTATCGTATCCCAGAGTTACCAAAGTACAGTTCCCCCATTACAAGTCTGATCAAAGACATGCTTCAATCTTCTCCAGATGTCAGACCAGACATTACACAGgcaagggctttgcttgattggccattcacttccatgaatttaggttagtcttaattagttcatgctccgtaaaagtgaaatgtaaaaggtcttctgtttctctaattgtatttcatttaccattgtag

upper sequence: GRMZM2G416684_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA08G15920.1 (Glycine max), 5'ss of exon 6
CTCTTGTATAGAATTTGCTACTTCAAATCAGCATTTGATGGAGAATCAAAGCTCCAAATACTTAACGGGAACTATCGCATCCCAGAATTGCCGAAGTACAgttcttctattacaacacttatcaaagacatgcttaattcttctccagatgccagaccggacatcacacaggcaagggctttgcttgattggccattcacttccatgaacttaggttggtcttaattagtgcatacaccatgaaacgaacacataagagatcttctgtttcaatgttgatgataaatgttctgttttag------
                                                                                                                      | || | |||||||||  |  ||   ||||||  |||||| || ||||| |||||||| ||||||||||||||||||||||  ||||| |  ||||||||||| ||  |  | ||| ||  |  |  |  |   |  |||  |       || | |  |||   |  |||||||    | |      
----------------------------------------------------------------------------------------------------------------------TGATAAGAGACATGCTCCAAGCTAGACCAGATAACAGACCAGATATCACGCAGGCAAGCGCTTTGCTTGATTGGCCATTCATCTCCATCAGTTTAGGTTGgtcatagatcatccat-caatagcattcataggtactagaattagggcaattaattactgactttggatgttcttccgtggtggcag

upper sequence: GRMZM2G416684_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA15G42460.1 (Glycine max), 5'ss of exon 6
CTCTTGTATAGAATTTGCTACTTCAAATCAGCATTTGATGGAGAATCAAAGCTCCAAATACTTAACGGGAACTATCGCATCCCAGAATTGCCGAAGTACAgttcttctattacaacacttatcaaagacatgcttaattcttctccagatgccagaccggacatcacacaggcaagggctttgcttgattggccattcacttccatgaacttaggttggtcttaattagtgcat--acaccatgaa-acgaacacataagagatcttctgtttcaatgttgatgataaatgttctgttttag------
                                                                       ||| ||||| || ||||| || || |||| |||  || | ||     | || | ||| |||||  |  ||   ||||||| |||||| || ||||| |||||||| |||||||||||||| |||||||  ||||| |  ||||||||||| ||  |  | |||  | | |||  | | | ||  |  |||  |       || | |  |||   |  |||| ||    | |      
-----------------------------------------------------------------------CTACCGCATTCCCGAATTACCAAAATACACTTCACCTGTCACGGACTTGATAAGAGAAATGCTCCAAGCTAGACCAGATGACAGACCAGATATCACGCAGgcaagcgctttgcttgattgaccattcatctccatcagtttaggttggtcatagatcatccattgatagcattcataggtacgtactagaattagggcaattaattactgactttggatgtacttccatggtggcag

upper sequence: GRMZM2G416684_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv13s0156g00640.t01 (Vitis vinifera), 5'ss of exon 6
CTCTTGTATAGAATTTGCTACTTCAAATCAGCATTTGATGGAGAATCAAAGCTCCAAATACTTAACGGGAACTATCGCATCCCAGAATTGCCGAAGTACAgttcttctattacaacacttatcaaagacatgcttaattcttctccagatgccagaccggacatcacacaggcaagggctttgcttgattggccattcacttccatgaacttaggttggtcttaattagtgcatacac-catgaaacgaacacataagagatcttctgtttcaatgttgatgataaatgttctgttttag----
                                                                       ||| ||||| ||||||||||| || ||||| ||   | | |||   || ||||  ||||||||  |  ||||||||||     |||| |||||||| |||||||| ||||||||||||||||||||||  |||||||  ||||||| || |||  | ||       |   | ||    |      ||  || |||||| |  ||| | ||| | | | || |  |   |    
-----------------------------------------------------------------------CTACCGCATTCCAGAATTGCCAAAATACAGCTCGAATGTGACAGACCTAATCAGGGACATGCTGCAAGCTTCTCCAGACAATCGACCAGACATCACGCAGgcaagcgctttgcttgattggccattcatctccatgactttaggttagttttagatggtttgagtccatgtcaacattaggggccaggaattttctgtctgcatgctaatgctgattcttttaatcatggcag