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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATCCGGTCGATTATGGTTTACATATACGGACAGCTATCTTCAGATAgttaagtaattttcatgttgtttagaacttaccatatgacactgttattaacacctaagattagagaatatttctgtcattttttggtgattaaaaaaaa...

Basic information

species Zea mays
transcript GRMZM2G416061_T03
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211058973|gb|FL460147.1|FL460147
EST:     GTTATCCGGTCGATTATGGTTTACATATACGGACAGCTATCTTCAGATA                         GTGTTGACATCAGCATGAATACTCATCTGAAGACTGTGAAGCTGACACTAA
genomic: GTTATCCGGTCGATTATGGTTTACATATACGGACAGCTATCTTCAGATAgttaagtaat ... gactttgtagGTGTTGACATCAGCATGAATACTCATCTGAAGACTGTGAAGCTGACACTAA
EST: gi|60353877|gb|DN220850.1|DN220850
EST:     GTTATCCGGTCGATTATGGTTTACATATACGGACAGCTATCTTCAGATA                         GTGTTGACATCAGCATGAATACTCATCTGAAGACTGTGAAGCTGACACTAA
genomic: GTTATCCGGTCGATTATGGTTTACATATACGGACAGCTATCTTCAGATAgttaagtaat ... gactttgtagGTGTTGACATCAGCATGAATACTCATCTGAAGACTGTGAAGCTGACACTAA
EST: gi|211405279|gb|FL027503.1|FL027503
EST:     GTTATCCGGTCGATTATGGTTTACATATACGGACAGCTATCTTCAGATA                         GCGTTGACATCAGCATGAATACTCATCTGAAGACTGTGAAGCTGACACTAA
genomic: GTTATCCGGTCGATTATGGTTTACATATACGGACAGCTATCTTCAGATAgttaagtaat ... gactttgtagGTGTTGACATCAGCATGAATACTCATCTGAAGACTGTGAAGCTGACACTAA
EST: gi|211405278|gb|FL027502.1|FL027502
EST:     GTTATCCGGTCGATTATGGTTTACATATACGGACAGCTATCTTCAGATA                         GTGTTGACATCAGCATGAATACTCATCTGAAGACTGTGAAGCTGACACTAA
genomic: GTTATCCGGTCGATTATGGTTTACATATACGGACAGCTATCTTCAGATAgttaagtaat ... gactttgtagGTGTTGACATCAGCATGAATACTCATCTGAAGACTGTGAAGCTGACACTAA
EST: gi|211405280|gb|FL027504.1|FL027504
EST:     GTTATCCGGTCGATTATGGTTTACATATACGGACAGCTATCTTCAGATA                         GTGTTGACATCAGCATGAATACTCATCTGAAGACTGTGAAGCTGACACTAA
genomic: GTTATCCGGTCGATTATGGTTTACATATACGGACAGCTATCTTCAGATAgttaagtaat ... gactttgtagGTGTTGACATCAGCATGAATACTCATCTGAAGACTGTGAAGCTGACACTAA