1 5' 3' | 2 5' 3' | 3 5' 3' |
GGTGTAGAACTAGAGCTTCGGAAACTTGAAGTGGCAGTGCAGGCCATTCATCAGAACTTGATATACCTCAAAGAAAGgcaagtcgtctattccaccagtctatgaaacatcttttgtagctaaatgtgtttcgccaattgagttttttttttctattccaaaacaaaaggttggcat...
species | Zea mays |
transcript | GRMZM2G414569_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GAAGTGGCAGTGCAGGCCATTCATCAGAACTTGATATACCTCAAAGAAAG GGAAGCAGAGATGCGAACTGTGAGTGAGACAACEST: gi|60352391|gb|DN219364.1|DN219364
genomic: GAAGTGGCAGTGCAGGCCATTCATCAGAACTTGATATACCTCAAAGAAAGgcaagtcgtc ... gcctacgcagGGAAGCAGAGATGCGAACTGTGAGTGAGACAAC
EST: GAAGTGGCAGTACAGGCCATTCATCAGAACTTGATATACCTCAAAGAAAG GGAAGCAGAGATGCGAACTGTGAGTGAGACAACAAATTCAAGGGTCGTCTGEST: gi|71450228|gb|DR831278.1|DR831278
genomic: GAAGTGGCAGTGCAGGCCATTCATCAGAACTTGATATACCTCAAAGAAAGgcaagtcgtc ... gcctacgcagGGAAGCAGAGATGCGAACTGTGAGTGAGACAACAAATTCAAGGGTCGTCTG
EST: GAAGTGGCAGTGCAGGCCATTCATCAGAACTTGATATACCTCAAAGAAAG GGAAGCAGAGATGCGAACTGTGAGTGAGACAACAAATTCAAGGGTCGTCTGEST: gi|18179418|gb|BM380628.1|BM380628
genomic: GAAGTGGCAGTGCAGGCCATTCATCAGAACTTGATATACCTCAAAGAAAGgcaagtcgtc ... gcctacgcagGGAAGCAGAGATGCGAACTGTGAGTGAGACAACAAATTCAAGGGTCGTCTG
EST: GAAGTGGCAGTGCAGGCCATTCATCAGAACTTGATATACCTCAAAGAAAG GGAAGCAGAGATGCGAACTGTGAGTGAGACAACAAATTCAAGGGTCGTCTGEST: gi|91869882|gb|EB400589.1|EB400589
genomic: GAAGTGGCAGTGCAGGCCATTCATCAGAACTTGATATACCTCAAAGAAAGgcaagtcgtc ... gcctacgcagGGAAGCAGAGATGCGAACTGTGAGTGAGACAACAAATTCAAGGGTCGTCTG
EST: GAAGTGGCAGTGCAGGCCATTCATCAGAACTTGATATACCTCAAAGAAAG GGAAGCAGAGATGCGAACTGTGAGTGAGACAACAAATTCAAGGGTCGTTTGEST: gi|5770138|gb|AI973312.1|AI973312
genomic: GAAGTGGCAGTGCAGGCCATTCATCAGAACTTGATATACCTCAAAGAAAGgcaagtcgtc ... gcctacgcagGGAAGCAGAGATGCGAACTGTGAGTGAGACAACAAATTCAAGGGTCGTCTG
EST: GAAGTGGCAGTGCAGGCCATTCATCAGAACTTGATATACCTCAAAGAAAG GGAAGCAGAGATGCGAACTGTGAGTGAGACAACAAATTCAAGGGTCGTCTGEST: gi|60394039|gb|DN226909.1|DN226909
genomic: GAAGTGGCAGTGCAGGCCATTCATCAGAACTTGATATACCTCAAAGAAAGgcaagtcgtc ... gcctacgcagGGAAGCAGAGATGCGAACTGTGAGTGAGACAACAAATTCAAGGGTCGTCTG
EST: GAAGTGGCAGTACAGGCCATTCATCAGAACTTGATATACCTCAAAGAAAG GGAAGCAGAGATGCGAACTGTGAGTGAGACAACAAATTCAAGGGTCGTCTGEST: gi|91869884|gb|EB400590.1|EB400590
genomic: GAAGTGGCAGTGCAGGCCATTCATCAGAACTTGATATACCTCAAAGAAAGgcaagtcgtc ... gcctacgcagGGAAGCAGAGATGCGAACTGTGAGTGAGACAACAAATTCAAGGGTCGTCTG
EST: GAAGTGGCAGTGCAGGCCATTCATCAGAACTTGATATACCTCAAAGAAAG GGAAGCAGAGATGCGAACTGTGAGTGAGACAACAAATTCAAGGGTCGTCTGEST: gi|5325020|gb|AI783211.1|AI783211
genomic: GAAGTGGCAGTGCAGGCCATTCATCAGAACTTGATATACCTCAAAGAAAGgcaagtcgtc ... gcctacgcagGGAAGCAGAGATGCGAACTGTGAGTGAGACAACAAATTCAAGGGTCGTCTG
EST: GAAGTGGCAGTGCAGGCCATTCATCAGAACTTGATATACCTCAAAGAAAG GGAAGCAGAGATGCGAACTGTGAGTGAGACAACAAATTCAAGGGTCGTCTGEST: gi|211528538|gb|FL329337.1|FL329337
genomic: GAAGTGGCAGTGCAGGCCATTCATCAGAACTTGATATACCTCAAAGAAAGgcaagtcgtc ... gcctacgcagGGAAGCAGAGATGCGAACTGTGAGTGAGACAACAAATTCAAGGGTCGTCTG
EST: GAAGTGGCAGTGCAGGCCATTCATCAGAACTTGATATACCTCAAAGAAAG GGAAGCAGAGATGCGAACTGTGAGTGAGACAACAAATTCAAGGGTCGTCTGEST: gi|211016332|gb|FL360736.1|FL360736
genomic: GAAGTGGCAGTGCAGGCCATTCATCAGAACTTGATATACCTCAAAGAAAGgcaagtcgtc ... gcctacgcagGGAAGCAGAGATGCGAACTGTGAGTGAGACAACAAATTCAAGGGTCGTCTG
EST: GAAGTGGCAGTACAGGCCATTCATCAGAACTTGATATACCTCAAAGAAAA GGAAGCAGAGATGCGAACTGTGAGTGAGACAACAAATTCAAGGGTCGTCTGEST: gi|40286941|gb|CK327333.1|CK327333
genomic: GAAGTGGCAGTGCAGGCCATTCATCAGAACTTGATATACCTCAAAGAAAGgcaagtcgtc ... gcctacgcagGGAAGCAGAGATGCGAACTGTGAGTGAGACAACAAATTCAAGGGTCGTCTG
EST: GAAGTGGCAGTACAGGCCATTCATCAGAACTTGATATACCTCAAAGAAAA GGAAGCAGAGATGCGAACTGTGAGTGAGACAACAAATTCAAGGGTCGTCTGEST: gi|18174124|gb|BM349512.1|BM349512
genomic: GAAGTGGCAGTGCAGGCCATTCATCAGAACTTGATATACCTCAAAGAAAGgcaagtcgtc ... gcctacgcagGGAAGCAGAGATGCGAACTGTGAGTGAGACAACAAATTCAAGGGTCGTCTG
EST: GAAGTGGCAGTGCAGGCCATTCATCAGAACTTGATATACCTCAAAGAAAG GGAAGCAGAGATGCGAACTGTGAGTGAGACAACAAATTCAAGGGTCGTCTGEST: gi|6020792|gb|AW065720.1|AW065720
genomic: GAAGTGGCAGTGCAGGCCATTCATCAGAACTTGATATACCTCAAAGAAAGgcaagtcgtc ... gcctacgcagGGAAGCAGAGATGCGAACTGTGAGTGAGACAACAAATTCAAGGGTCGTCTG
EST: GAAGTGGCAGTGCAGGCCATTCATCAGAACTTGATATACCTCAAAGAAAG GGAAGCAGAGATGCGAACTGTGAGTGAGACAACAAATTCAAGGGTCGTCTG
genomic: GAAGTGGCAGTGCAGGCCATTCATCAGAACTTGATATACCTCAAAGAAAGgcaagtcgtc ... gcctacgcagGGAAGCAGAGATGCGAACTGTGAGTGAGACAACAAATTCAAGGGTCGTCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGTAGAACTAGAGCTTCGGAAACTTGAAGTGGCAGTGCAGGCCATTCATCAGAACTTGATATACCTCAAAGAAAGgcaagtcgtctattccaccagtctatgaaacatcttttgtagctaaatgtgtttcgccaattgagttttttttttctattccaaaacaaaaggttggcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacaaaa