1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CAAGATTGGTGTTGGTTATGAGGCTTTCCAAAACCAACCTAACTTTTGTGCATCGCCATTTGAGAGCTGTTTGAACAATCAGCTATGGACCTTTTTGGAGgtaattatataactattataaactgtctctggaatttttcctttttttcttgcactagatgagaaattgtgcatcgatcctataaagagcagtaacgata...
species | Zea mays |
transcript | GRMZM2G412911_T03 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CATCGCCATTTGAGAGCTGTTTGAACAATCAGCTATGGACCTTTTTGGAG TCTGACAAAAACCGGATAAGCATGAGCCGACAGCCCCAATATGTTGTGCAGEST: gi|26457309|gb|CA828892.1|CA828892
genomic: CATCGCCATTTGAGAGCTGTTTGAACAATCAGCTATGGACCTTTTTGGAGgtaattatat ... tatgtttcagTCTGACAAAAACCGGATAAGCATGAGCCGACAGCCCCAATATGTTGTGCAG
EST: CATCGCCATTTGAGAGCTGTTTGAACAATCAGCTATGGACCTTTTTGGAG TCTGACAAAAACCGGATAAGCATGAGCCGACAGCCCCAATATGTTGTGCAGEST: gi|76915075|gb|DV165808.1|DV165808
genomic: CATCGCCATTTGAGAGCTGTTTGAACAATCAGCTATGGACCTTTTTGGAGgtaattatat ... tatgtttcagTCTGACAAAAACCGGATAAGCATGAGCCGACAGCCCCAATATGTTGTGCAG
EST: CATCGCCATTTGAGAGCTGTTTGAACAATCAGCTATGGACCTTTTTGGAG TCTGACAAAAACCGGATAAGCATGAGCCGACAGCCCCAATATGTTGTGCAGEST: gi|76936583|gb|DV174787.1|DV174787
genomic: CATCGCCATTTGAGAGCTGTTTGAACAATCAGCTATGGACCTTTTTGGAGgtaattatat ... tatgtttcagTCTGACAAAAACCGGATAAGCATGAGCCGACAGCCCCAATATGTTGTGCAG
EST: CATCGCCATTTGAGAGCTGTTTGAACAATCAGCTATGGACCTTTTTGGAG TCTGACAAAAACCGGATAAGCATGAGCCGACAGCCCCAATATGTTGTGCAG
genomic: CATCGCCATTTGAGAGCTGTTTGAACAATCAGCTATGGACCTTTTTGGAGgtaattatat ... tatgtttcagTCTGACAAAAACCGGATAAGCATGAGCCGACAGCCCCAATATGTTGTGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGATTGGTGTTGGTTATGAGGCTTTCCAAAACCAACCTAACTTTTGTGCATCGCCATTTGAGAGCTGTTTGAACAATCAGCTATGGACCTTTTTGGAGgtaattatataactattataaactgtctctggaatttttcctttttttcttgcactagatgagaaattgtgcatcgatcctataaagagcagtaacgata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG