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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAGCACAATAAACTATTTGGAAGCTGGACAGCTCTCTTCATTTTTTAGAAACAGCGAACGCCCCAGTAAGCCGTTGCAGGTCGTGGTTGCTGGTGCAGgtctgacataattcacgattaatgtttgcacatatgttatttttctttgtaagtggggaacttcaagggaatctttaattggttggtagttttatagtttgtaatgttacttttgcag

Basic information

species Zea mays
transcript GRMZM2G410515_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G410515_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g08570.1 (Oryza sativa), 5'ss of exon 3
GAAAGCACAATAAACTATTTGGAAGCTGGACAGCTCTCTTCATTTTTTAGAAACAGCGAACGCCCCAGTAAGCCGTTGCAGGTCGTGGTTGCTGGTGCAGgtctgacataattcacgattaatgtttgcacatatgttatttttctttgtaagtggggaacttcaagggaatctttaattggttggtagttttatagtttgtaatgtta----cttttgcag
|||| ||||||||||| ||||||||||||||| || ||||||||||| |||||||| ||||  |||| ||| || || ||||||||| ||||||| |||||| ||| |||||||  |  |    ||  || ||   | ||||   | | ||  |    |||||  |  | |     |    | |  |||  || |||||| ||   ||      |||| |||
GAAAACACAATAAACTTTTTGGAAGCTGGACAACTATCTTCATTTTTCAGAAACAGTGAACAACCCACTAAACCATTACAGGTCGTGATTGCTGGAGCAGgtatgatataattctaggat----ttgacagatgaataatttacatatatatct----aactttgatagcagtcacatcgtggtcttagcattgtagtttttagctttgatttttttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211417839|gb|FL018169.1|FL018169
EST:     AAACAGCGAACGCCCCAGTAAGCCGTTGCAGGTCGTGGTTGCTGGTGCAG                         GATTGGCTGGTCTATCAACAGCGAAGTATCTGGCAGATGCTGGACATAAAC
genomic: AAACAGCGAACGCCCCAGTAAGCCGTTGCAGGTCGTGGTTGCTGGTGCAGgtctgacata ... acttttgcagGATTGGCTGGTCTATCAACAGCGAAGTATCTGGCAGATGCTGGACATAAAC
EST: gi|211005245|gb|FL018195.1|FL018195
EST:     AAACAGCGAACGCCCCAGTAAGCCGTTGCAGGTCGTGGTTGCTGGTGCAG                         GATTGGCTGGTCTATCAACAGCGAAGTATCTGGCAGATGCTGGACATAAAC
genomic: AAACAGCGAACGCCCCAGTAAGCCGTTGCAGGTCGTGGTTGCTGGTGCAGgtctgacata ... acttttgcagGATTGGCTGGTCTATCAACAGCGAAGTATCTGGCAGATGCTGGACATAAAC
EST: gi|211002469|gb|FL018188.1|FL018188
EST:     AAACAGCGAACGCCCCAGTAAGCCGTTGCAGGTCGTGGTTGCTGGTGCAG                         GATTGGCTGGTCTATCAACAGCGAAGTATCTGGCAGATGCTGGACATAAAC
genomic: AAACAGCGAACGCCCCAGTAAGCCGTTGCAGGTCGTGGTTGCTGGTGCAGgtctgacata ... acttttgcagGATTGGCTGGTCTATCAACAGCGAAGTATCTGGCAGATGCTGGACATAAAC
EST: gi|211417840|gb|FL018170.1|FL018170
EST:     AAACAGCGAACGCCCCAGTAAGCCGTTGCAGGTCGTGGTTGCTGGTGCAG                         GATTGGCTGGTCTATCAACAGCGAAGTATCTGGCAGATGCTGGACATAAAC
genomic: AAACAGCGAACGCCCCAGTAAGCCGTTGCAGGTCGTGGTTGCTGGTGCAGgtctgacata ... acttttgcagGATTGGCTGGTCTATCAACAGCGAAGTATCTGGCAGATGCTGGACATAAAC
EST: gi|211417848|gb|FL018178.1|FL018178
EST:     AAACAGCGAACGCCCCAGTAAGCCGTTGCAGGTCGTGGTTGCTGGTGCAG                         GATTGGCTGGTCTATCAACAGCGAAGTATCTGGCAGATGCTGGACATAAAC
genomic: AAACAGCGAACGCCCCAGTAAGCCGTTGCAGGTCGTGGTTGCTGGTGCAGgtctgacata ... acttttgcagGATTGGCTGGTCTATCAACAGCGAAGTATCTGGCAGATGCTGGACATAAAC
EST: gi|211002475|gb|FL018194.1|FL018194
EST:     AAACAGCGAACGCCCCAGTAAGCCGTTGCAGGTCGTGGTTGCTGGTGCAG                         GATTGGCTGGTCTATCAACAGCGAAGTATCTGGCAGATGCTGGACATAAAC
genomic: AAACAGCGAACGCCCCAGTAAGCCGTTGCAGGTCGTGGTTGCTGGTGCAGgtctgacata ... acttttgcagGATTGGCTGGTCTATCAACAGCGAAGTATCTGGCAGATGCTGGACATAAAC
EST: gi|71765383|gb|DR963320.1|DR963320
EST:     AAACAGCGAACGCCCCAGTAAGCCGTTGCAGGTCGTGGTTGCTGGTGCAG                         GATTGGCTGGTCTATCAACAGCGAAGTATCTGGCAGATGCTGGACATAAAC
genomic: AAACAGCGAACGCCCCAGTAAGCCGTTGCAGGTCGTGGTTGCTGGTGCAGgtctgacata ... acttttgcagGATTGGCTGGTCTATCAACAGCGAAGTATCTGGCAGATGCTGGACATAAAC
EST: gi|211005246|gb|FL018196.1|FL018196
EST:     AAACAGCGAACGCCCCAGTAAGCCGTTGCAGGTCGTGGTTGCTGGTGCAG                         GATTGGCTGGTCTATCAACAGC
genomic: AAACAGCGAACGCCCCAGTAAGCCGTTGCAGGTCGTGGTTGCTGGTGCAGgtctgacata ... acttttgcagGATTGGCTGGTCTATCAACAGC
EST: gi|211002473|gb|FL018192.1|FL018192
EST:     AAACAGCGAACGCCCCAGTAAGCCGTTGCAGGTCGTGGTTGCTGGTGCAG                         GAATGGCTGGTCTATCAACAGCGAAGTAT
genomic: AAACAGCGAACGCCCCAGTAAGCCGTTGCAGGTCGTGGTTGCTGGTGCAGgtctgacata ... acttttgcagGATTGGCTGGTCTATCAACAGCGAAGTAT
EST: gi|211005249|gb|FL018199.1|FL018199
EST:     AAACAGCGAACGCCCCAGTAAGCCGTTGCAGGTCGTGGTTGCTGGTGCAG                         GATTGGCTGGTCTATCAACAGCGAAGTATCTGGCAGATGCTGGACATAAAC
genomic: AAACAGCGAACGCCCCAGTAAGCCGTTGCAGGTCGTGGTTGCTGGTGCAGgtctgacata ... acttttgcagGATTGGCTGGTCTATCAACAGCGAAGTATCTGGCAGATGCTGGACATAAAC
EST: gi|211417844|gb|FL018174.1|FL018174
EST:     AAACAGCGAACGCCCCAGTAAGCCGTTGCAGGTCGTGGTTGCTGGTGCAG                         GATTGGCTGGTCTATCAACAGCGAAGTATCTTGCAGATGCTGGACATAAAC
genomic: AAACAGCGAACGCCCCAGTAAGCCGTTGCAGGTCGTGGTTGCTGGTGCAGgtctgacata ... acttttgcagGATTGGCTGGTCTATCAACAGCGAAGTATCTGGCAGATGCTGGACATAAAC
EST: gi|211417847|gb|FL018177.1|FL018177
EST:     AAACAGCGAACGCCCCAGTAAGCCGTTGCAGGTCGTGGTTGCTGGTGCAG                         GATTGGCTGGTCTATCAACAGCGAAGTATCTGGCAGATGCTGGACATAAAC
genomic: AAACAGCGAACGCCCCAGTAAGCCGTTGCAGGTCGTGGTTGCTGGTGCAGgtctgacata ... acttttgcagGATTGGCTGGTCTATCAACAGCGAAGTATCTGGCAGATGCTGGACATAAAC
EST: gi|211002464|gb|FL018183.1|FL018183
EST:     AAACAGCGAACGCCCCAGTAAGCCGTTGCAGGTCGTGGTTGCTGGTGCAG                         GATTGGCTGGTCTATCAACAGCGAAGTATCTGGCAGATGCTGGACATAAAC
genomic: AAACAGCGAACGCCCCAGTAAGCCGTTGCAGGTCGTGGTTGCTGGTGCAGgtctgacata ... acttttgcagGATTGGCTGGTCTATCAACAGCGAAGTATCTGGCAGATGCTGGACATAAAC
EST: gi|76294009|gb|DV033577.1|DV033577
EST:     AAACAGCGAACGCCCCAGTAAGCCGTTGCAGGTCGTGGTTGCTGGTGCAG                         GATTGGCTGGTCTATCAACAGCGAAGTATCTGGCAGATGCTGGACATAAAC
genomic: AAACAGCGAACGCCCCAGTAAGCCGTTGCAGGTCGTGGTTGCTGGTGCAGgtctgacata ... acttttgcagGATTGGCTGGTCTATCAACAGCGAAGTATCTGGCAGATGCTGGACATAAAC
EST: gi|78075888|gb|DV504322.1|DV504322
EST:     AAACAGCGAACGCCCCAGTAAGCCGTTGCAGGTCGTGGTTGCTGGTGCAG                         GATTGGCTGGTCTATCAACAGCGAAGTATCTGGCAGATGCTGGACATAAAC
genomic: AAACAGCGAACGCCCCAGTAAGCCGTTGCAGGTCGTGGTTGCTGGTGCAGgtctgacata ... acttttgcagGATTGGCTGGTCTATCAACAGCGAAGTATCTGGCAGATGCTGGACATAAAC
EST: gi|211417850|gb|FL018180.1|FL018180
EST:     AAACAGCGAACGCCCCAGTAAGCCGTTGCAGGTCGTGGTTGCTGGTGCAG                         GATTGGCTGGTCTATCAACAGCGAAGTATCTGGCAGATGCTGGACATAAAC
genomic: AAACAGCGAACGCCCCAGTAAGCCGTTGCAGGTCGTGGTTGCTGGTGCAGgtctgacata ... acttttgcagGATTGGCTGGTCTATCAACAGCGAAGTATCTGGCAGATGCTGGACATAAAC
EST: gi|211415305|gb|FL018166.1|FL018166
EST:     AAACAGCGAACGCCCCAGTAAGCCGTTGCAGGTCGTGGTTGCTGGTGCAG                         GATTGGCTGGTCTATCAACAGCGAAGTATCTGGCAGATGCTGGACATAAAC
genomic: AAACAGCGAACGCCCCAGTAAGCCGTTGCAGGTCGTGGTTGCTGGTGCAGgtctgacata ... acttttgcagGATTGGCTGGTCTATCAACAGCGAAGTATCTGGCAGATGCTGGACATAAAC
EST: gi|211417841|gb|FL018171.1|FL018171
EST:     AAACAGCGAACGCCCCAGTAAGCCGTTGCAGGTCGTGGTTGCTGGTGCAG                         GATTGGCTGGTCTATCAACAGCGAAGTATCTGGCAGATGCTGGACATAAAC
genomic: AAACAGCGAACGCCCCAGTAAGCCGTTGCAGGTCGTGGTTGCTGGTGCAGgtctgacata ... acttttgcagGATTGGCTGGTCTATCAACAGCGAAGTATCTGGCAGATGCTGGACATAAAC
EST: gi|211002466|gb|FL018185.1|FL018185
EST:     AAACAGCGAACGCCCCAGTAAGCCGTTGCAGGTCGTGGTTGCTGGTGCAG                         GATTGGCTGGTCTATCAACAGCGAAGTATCTGGCAGATGCTGGACATAAAC
genomic: AAACAGCGAACGCCCCAGTAAGCCGTTGCAGGTCGTGGTTGCTGGTGCAGgtctgacata ... acttttgcagGATTGGCTGGTCTATCAACAGCGAAGTATCTGGCAGATGCTGGACATAAAC