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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCAACTGCTGGCCCTCTTCGCCCCATTGTGCAATGCCAGACTCTCAAGTACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcattgctttgccattgtctttccatttgagttctattgagccatgttgctttcttgaatgttctagtttgtttttattggtgttctggaacaat...

Basic information

species Zea mays
transcript GRMZM2G409407_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G409407_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os08g06560.1 (Oryza sativa), 5'ss of exon 1
CCCAACTGCTGGCCCTCTTCGCCCCATTGTGCAATGCCAGACTCTCAAGTACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatg-cattgctttgccattgtctttccatttgagttctattgagccatgttgctttcttgaatgttctagtttgtttttattggtgttctggaacaat--
                                                       ||||||||||||||||||||||| |||| |||||||| ||||||||||||| | ||| | | ||| | | |||   |   ||  ||  | |  |  ||   | | ||| |   |   | |  ||       | | | |  |    |  
-------------------------------------------------------ATGAAGTCGAGGGCTGGGAGAGGCTTTATCCTTGAGGTGCTGAAGgtgatgtccttgttgtaccactatatttgagt---agcccttatcaatctagtgtatcttttggaccctgggggtgtttagatccaggggtgtaaagtttttg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211263649|gb|FL031053.1|FL031053
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|211266085|gb|FL031064.1|FL031064
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAK                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|13558589|gb|BG549945.1|BG549945
EST:     ACAACATGAAGTTGTTGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|211263644|gb|FL031048.1|FL031048
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|211247721|gb|FL179851.1|FL179851
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTG
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTG
EST: gi|12046544|gb|BF728683.1|BF728683
EST:     GAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: GAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|17932033|gb|BM268993.1|BM268993
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|78111808|gb|DV530205.1|DV530205
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|211266082|gb|FL031061.1|FL031061
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|18175297|gb|BM350662.1|BM350662
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|18163726|gb|BM333565.1|BM333565
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|211266086|gb|FL031065.1|FL031065
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|17932056|gb|BM269016.1|BM269016
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|76917654|gb|DV166940.1|DV166940
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|211263648|gb|FL031052.1|FL031052
EST:     ACAACATGAAGTCGAGGGCTGGAAGAGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|18167138|gb|BM336977.1|BM336977
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|211247720|gb|FL179850.1|FL179850
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|211456254|gb|FL273553.1|FL273553
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|211129396|gb|FL066372.1|FL066372
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|29945578|gb|CB815711.1|CB815711
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|211266087|gb|FL031066.1|FL031066
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|18170677|gb|BM340517.1|BM340517
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|33091972|gb|CF051966.1|CF051966
EST:     ACAACATGAAGTCGAGGGCTGGGAGGGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCGTTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|211263643|gb|FL031047.1|FL031047
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|211263650|gb|FL031054.1|FL031054
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|17929883|gb|BM266843.1|BM266843
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|71774174|gb|DR972054.1|DR972054
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|76281416|gb|DV020984.1|DV020984
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|18164502|gb|BM334341.1|BM334341
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|76917652|gb|DV166939.1|DV166939
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|67026835|gb|CO455584.1|CO455584
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|211021602|gb|FL466049.1|FL466049
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|27522089|gb|CA989195.1|CA989195
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|78085923|gb|DV514316.1|DV514316
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|18174436|gb|BM349824.1|BM349824
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|6973668|gb|AW438242.1|AW438242
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|60353856|gb|DN220829.1|DN220829
EST:     GGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: GGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|71436833|gb|DR817883.1|DR817883
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|29946616|gb|CB816239.1|CB816239
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|211266077|gb|FL031056.1|FL031056
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|18165946|gb|BM335785.1|BM335785
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|211266083|gb|FL031062.1|FL031062
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|71774173|gb|DR972053.1|DR972053
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|16380285|gb|BI993410.1|BI993410
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|78180971|gb|DV551344.1|DV551344
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|7238188|gb|AW573410.1|AW573410
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGTAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|211266080|gb|FL031059.1|FL031059
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|116829000|gb|EC863170.1|EC863170
EST:     ACAACATGAAGTCGA-GGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|18173527|gb|BM348915.1|BM348915
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|60348810|gb|DN215783.1|DN215783
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|211263641|gb|FL031045.1|FL031045
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|78086900|gb|DV515293.1|DV515293
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|211263645|gb|FL031049.1|FL031049
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|211266081|gb|FL031060.1|FL031060
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
EST: gi|211266084|gb|FL031063.1|FL031063
EST:     ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAG                         GCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT
genomic: ACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcatt ... tcgattgcagGCTGCCGGCATTCCAAAGAAGCTTGCCCCAACCATTGGCATTTCTGTGGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
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CCCAACTGCTGGCCCTCTTCGCCCCATTGTGCAATGCCAGACTCTCAAGTACAACATGAAGTCGAGGGCTGGGAGAGGATTTACCCTTGAGGAGCTGAAGgtgatgcattgctttgccattgtctttccatttgagttctattgagccatgttgctttcttgaatgttctagtttgtttttattggtgttctggaacaat

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