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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggccttgtttgcataacctgatttatttgcttcttttgtgatgctaaaaggaacgtgtttgctatcttgattacttactatattttgcacttcgca...

Basic information

species Zea mays
transcript GRMZM2G408242_T03
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211116523|gb|FL229712.1|FL229712
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|211116525|gb|FL229714.1|FL229714
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|88748070|gb|DY532211.1|DY532211
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTATCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|211115736|gb|FL229707.1|FL229707
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|211115731|gb|FL229702.1|FL229702
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|60352426|gb|DN219399.1|DN219399
EST:     CACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: CACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|211117332|gb|FL229741.1|FL229741
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|211115739|gb|FL229710.1|FL229710
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|211116530|gb|FL229719.1|FL229719
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|211115740|gb|FL229711.1|FL229711
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|211116529|gb|FL229718.1|FL229718
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|211117322|gb|FL229731.1|FL229731
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|211116535|gb|FL229724.1|FL229724
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|211116537|gb|FL229726.1|FL229726
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|211117328|gb|FL229737.1|FL229737
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|211116524|gb|FL229713.1|FL229713
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCANGCGTGTGTATACAAC
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|211117330|gb|FL229739.1|FL229739
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|211116528|gb|FL229717.1|FL229717
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|18650040|gb|BM498859.1|BM498859
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|211116534|gb|FL229723.1|FL229723
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|22818772|gb|BU498862.1|BU498862
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|17970138|gb|BM276903.1|BM276903
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|5325108|gb|AI783299.1|AI783299
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|19822800|gb|BQ048824.1|BQ048824
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|211116533|gb|FL229722.1|FL229722
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|211115728|gb|FL229699.1|FL229699
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|211117326|gb|FL229735.1|FL229735
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|211114947|gb|FL229695.1|FL229695
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|211116532|gb|FL229721.1|FL229721
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         ARGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagA-GTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|211115733|gb|FL229704.1|FL229704
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|211116531|gb|FL229720.1|FL229720
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|211117318|gb|FL229727.1|FL229727
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|74235410|gb|DT643324.1|DT643324
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|211115727|gb|FL229698.1|FL229698
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|50333682|gb|CO528808.1|CO528808
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|211117324|gb|FL229733.1|FL229733
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|211117325|gb|FL229734.1|FL229734
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|6020447|gb|AW065375.1|AW065375
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|211117323|gb|FL229732.1|FL229732
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|149084617|gb|EE174095.2|EE174095
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|211117321|gb|FL229730.1|FL229730
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|211115734|gb|FL229705.1|FL229705
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATAC
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATAC
EST: gi|211115735|gb|FL229706.1|FL229706
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|148990759|gb|EE032170.2|EE032170
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|93015766|gb|EB641286.1|EB641286
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|211115729|gb|FL229700.1|FL229700
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|211114948|gb|FL229696.1|FL229696
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|26456727|gb|CA828310.1|CA828310
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|20803321|gb|BQ294371.1|BQ294371
EST:     TTATCTGTTTGTCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTG-GAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|211115737|gb|FL229708.1|FL229708
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|22521612|gb|BU080423.1|BU080423
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|211115732|gb|FL229703.1|FL229703
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|211115730|gb|FL229701.1|FL229701
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|211117331|gb|FL229740.1|FL229740
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATATCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|211114945|gb|FL229693.1|FL229693
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|211117319|gb|FL229728.1|FL229728
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTTGTATACAAGGAAGA
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGT-GTATACAAGGAAGA
EST: gi|211116526|gb|FL229715.1|FL229715
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|211115726|gb|FL229697.1|FL229697
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|211117329|gb|FL229738.1|FL229738
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|148937775|gb|EC881986.2|EC881986
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
EST: gi|211116527|gb|FL229716.1|FL229716
EST:     ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG                         AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG
genomic: ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 45 (upstream exon), 49 (downstream exon)
Score: 221

ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG


Block sizes: 45 (upstream exon), 49 (downstream exon)
Score: 177

ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG


Block sizes: 45 (upstream exon), 49 (downstream exon)
Score: 198

ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG


Block sizes: 45 (upstream exon), 47 (downstream exon)
Score: 166

ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggcctt ... gttatttcagAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAGgttaggccttgtttgcataacctgatttatttgcttcttttgtgatgctaaaaggaacgtgtttgctatcttgattacttactatattttgcacttcgca

- -  TGGAGG
- - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaggaa