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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCGGTTTGAAATTAAGGATATTCTTGAAATGGAAATGAAGCTCCTGGAAGCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatccgtttcctgtgtaatcgctggtgttttttcgtggaacattacctttctcatatctccacagctttcatttatttgttctagcggaactccaagttgatagatgtcctatctgcag

Basic information

species Zea mays
transcript GRMZM2G408242_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G408242_T03 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os09g32680.4 (Oryza sativa), 5'ss of exon 5
ATCGGTTTGAAATTAAGGATATTCTTGAAATGGAAATGAAGCTCCTGGAAGCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatccgtttcctgtgtaatcgctggtgttttttcgtggaacattacctttctc--atatctccacagctttcatttatttgttc------tagcggaactccaa----gttgatagatgtcctatctgcag
| ||||||||||| |||||||| |||||||||||||||||||||||||| || || ||||||||||| ||||||| ||| |||||||||||||| ||||||||||| ||  |||||  | | ||    | ||           ||||||| ||||| |    ||  ||  |||  | || |||   ||        | | || || |||     || | |||||   |   |  ||
ACCGGTTTGAAATCAAGGATATCCTTGAAATGGAAATGAAGCTCCTGGAGGCACTTGACTATTATTTAGTTGTTTACCACCCATATCGTCCTCTTTTACAgtaagattctttttccactatcatg--cgatg-------aaacaacattatctttcaccggaattaccgaagcccttatatatactttaaatgaacatcagagctgcaatggtattaacagatgctttgattttag

upper sequence: GRMZM2G408242_T03 (Zea mays), 5'ss of exon 6
lower sequence: Vv00s0360g00050.t01 (Vitis vinifera), 5'ss of exon 6
ATCGGTTTGAAATTAAGGATATTCTTGAAATGGAAATGAAGCTCCTGGAAGCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatccgtttcctgtgtaatcgctggtgttttttcgtggaacattacctttctcatatctccacagctttcatttat-ttgttctagcggaactccaagttgatagatgtcctatctgcag
|| ||| ||| || ||||| || |||||||||||||||||| || | ||||||||| |||||||||| ||||| |||||||| || ||| |  | |  |||||||  | | |||| ||| || ||     | ||||   ||  |    |   | |||   ||  |   | | || || |   ||||   |||  |||  | | ||| |                 
ATAGGTATGAGATCAAGGACATACTTGAAATGGAAATGAAGATCTTAGAAGCTCTCAACTATTATTTAGTTGTATTCCATCCTTACCGTGCATTGTCTCAgtaag--tacatttcatgttta-tcatc--tattttactgtatatgtatgtttatcttgcattcc---atccttaatgtgcattgtctcagc--aacctcta-ttgctttc--------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78021949|gb|DV490336.1|DV490336
EST:     GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACA                         GTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
genomic: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatcc ... ctatctgcagGTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
EST: gi|5860411|gb|AW011633.1|AW011633
EST:     GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACA                         GTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
genomic: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatcc ... ctatctgcagGTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
EST: gi|37373889|gb|CF623269.1|CF623269
EST:     GCTCTCGACTATTATTTGGTNGTTTTCCATCCATATCGTCCTCTCTTACA                         GTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
genomic: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatcc ... ctatctgcagGTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
EST: gi|60339571|gb|DN206544.1|DN206544
EST:     GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACA                         GTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
genomic: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatcc ... ctatctgcagGTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
EST: gi|32930869|gb|CF035681.1|CF035681
EST:     GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACA                         GTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
genomic: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatcc ... ctatctgcagGTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
EST: gi|78544078|gb|DV621576.1|DV621576
EST:     TATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACA                         GTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
genomic: TATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatcc ... ctatctgcagGTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
EST: gi|60352672|gb|DN219645.1|DN219645
EST:     GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACA                         GTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
genomic: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatcc ... ctatctgcagGTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
EST: gi|22549285|gb|BU101486.1|BU101486
EST:     GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACA                         GTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
genomic: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatcc ... ctatctgcagGTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
EST: gi|5739678|gb|AI947473.1|AI947473
EST:     GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACA                         GTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
genomic: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatcc ... ctatctgcagGTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
EST: gi|211507205|gb|FL420316.1|FL420316
EST:     GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACA                         GTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
genomic: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatcc ... ctatctgcagGTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
EST: gi|6760625|gb|AW324724.1|AW324724
EST:     GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACA                         GTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
genomic: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatcc ... ctatctgcagGTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
EST: gi|20301653|gb|BQ164596.1|BQ164596
EST:     GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACA                         GTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
genomic: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatcc ... ctatctgcagGTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
EST: gi|148990758|gb|EE032169.2|EE032169
EST:     GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACA                         GTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
genomic: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatcc ... ctatctgcagGTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
EST: gi|78022288|gb|DV490675.1|DV490675
EST:     GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACA                         GTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
genomic: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatcc ... ctatctgcagGTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
EST: gi|6742399|gb|AW313214.1|AW313214
EST:     GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACA                         GTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
genomic: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatcc ... ctatctgcagGTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG