1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ACATGATGGGCTCATGTTCAGGCAGAACTTCTCCATTAGGTCCTATGAGATTGGGGCAGATAGGACGGCATCTATAGAGACGCTGATGAACCATTTGCAGgtaaaatgatttgttaattttgaggtgtgagattttgtagctgaggattggacgatgaaaaagtttggatttgatccag
species | Zea mays |
transcript | GRMZM2G406603_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGGGGCAGATAGGACGGCATCTATAGAGACGCTGATGAACCATTTGCAG GAAACGGCACTCAATCATGTGAAGACCGCTGGGCTGCTAGGTGATGGATTTEST: gi|32869619|gb|CF009301.1|CF009301
genomic: TTGGGGCAGATAGGACGGCATCTATAGAGACGCTGATGAACCATTTGCAGgtaaaatgat ... tttgatccagGAAACGGCACTCAATCATGTGAAGACCGCTGGGCTGCTAGGTGATGGATTT
EST: GATGAACCATTTGCAG GAAACGGCACTCAATCATGTGAAGACCGCTGGGCTGCTAGGTGATGGATTTEST: gi|148931914|gb|EC875122.2|EC875122
genomic: GATGAACCATTTGCAGgtaaaatgat ... tttgatccagGAAACGGCACTCAATCATGTGAAGACCGCTGGGCTGCTAGGTGATGGATTT
EST: TTGGGGCAGATAGGACGGCATCTATAGAGACGCTGATGAACCATTTGCAG GAAACGGCACTCAATCATGTGAAGACCGCTGGGCTGCTAGGTGATGGATTTEST: gi|149011230|gb|EE042311.2|EE042311
genomic: TTGGGGCAGATAGGACGGCATCTATAGAGACGCTGATGAACCATTTGCAGgtaaaatgat ... tttgatccagGAAACGGCACTCAATCATGTGAAGACCGCTGGGCTGCTAGGTGATGGATTT
EST: TTGGGGCAGATAGGACGGCATCTATAGAGACGCTGATGAACCATTTGCAG GAAACGGCACTCAATCATGTGAAGACCGCTGGGCTGCTAGGTGATGGATTTEST: gi|148991055|gb|EE032501.2|EE032501
genomic: TTGGGGCAGATAGGACGGCATCTATAGAGACGCTGATGAACCATTTGCAGgtaaaatgat ... tttgatccagGAAACGGCACTCAATCATGTGAAGACCGCTGGGCTGCTAGGTGATGGATTT
EST: TTGGGGCAGATAGGACGGCATCTATAGAGACGCTGATGAACCATTTGCAG GAAACGGCACTCAATCATGTGAAGACCGCTGGGCTGCTAGGTGATGGATTTEST: gi|76289683|gb|DV029251.1|DV029251
genomic: TTGGGGCAGATAGGACGGCATCTATAGAGACGCTGATGAACCATTTGCAGgtaaaatgat ... tttgatccagGAAACGGCACTCAATCATGTGAAGACCGCTGGGCTGCTAGGTGATGGATTT
EST: TTGGGGCAGATAGGACGGCATCTATAGAGACGCTGATGAACCATTTGCAG GAAACGGCACTCAATCATGTGAAGACCGCTGGGCTGCTAGGTGATGGATTTEST: gi|149097427|gb|EE183283.2|EE183283
genomic: TTGGGGCAGATAGGACGGCATCTATAGAGACGCTGATGAACCATTTGCAGgtaaaatgat ... tttgatccagGAAACGGCACTCAATCATGTGAAGACCGCTGGGCTGCTAGGTGATGGATTT
EST: TTGGGGCAGATAGGACGGCATCTATAGAGACGCTGATGAACCATTTGCAG GANACGGCACTCAATCATGTGAAGACCGCTGGGCTGCTAGGTGATGGATTTEST: gi|1298487|gb|W21737.1|W21737
genomic: TTGGGGCAGATAGGACGGCATCTATAGAGACGCTGATGAACCATTTGCAGgtaaaatgat ... tttgatccagGAAACGGCACTCAATCATGTGAAGACCGCTGGGCTGCTAGGTGATGGATTT
EST: TTGGGGCAGATAGGACGGCATCTATAGAGACGCTGATGAACCATTTGCAG GAAACGGCACTCAATCATGTGAAGACCGCTGGGCTGCTAGGTGATGGATTT
genomic: TTGGGGCAGATAGGACGGCATCTATAGAGACGCTGATGAACCATTTGCAGgtaaaatgat ... tttgatccagGAAACGGCACTCAATCATGTGAAGACCGCTGGGCTGCTAGGTGATGGATTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACATGATGGGCTCATGTTCAGGCAGAACTTCTCCATTAGGTCCTATGAGATTGGGGCAGATAGGACGGCATCTATAGAGACGCTGATGAACCATTTGCAGgtaaaatgatttgttaattttgaggtgtgagattttgtagctgaggattggacgatgaaaaagtttggatttgatccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT