1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CTCGCTGCTGTGGGAAAAGAACAAACCTGCTCCTAACCCAACTCGATACAATTTATCTTCATTCGCGATCACACTGAATGAGTTGACCCCAGGGCTGCAGgtatggatctacatgtggattgccacataaaagtgtttggtaactaagtttttgtccttaattgcttggccattcctggattcag
species | Zea mays |
transcript | GRMZM2G402653_T04 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATTTATCTTCATTCGCGATCACACTGAATGAGTTGACCCCAGGGCTGCAG GAGAAACTTCCACCTACTGATTCACGGCTGAGACCAGACCAGCGCCACCTAEST: gi|33099373|gb|CF059333.1|CF059333
genomic: ATTTATCTTCATTCGCGATCACACTGAATGAGTTGACCCCAGGGCTGCAGgtatggatct ... ctggattcagGAGAAACTTCCACCTACTGATTCACGGCTGAGACCAGACCAGCGCCACCTA
EST: ATTTATCTTCATTCGCGATCACACTGAATGAGTTGACCCCAGGGCTGCAG GAGAAACTTCCACCTACTGATTCACGGCEST: gi|67022546|gb|CO451295.1|CO451295
genomic: ATTTATCTTCATTCGCGATCACACTGAATGAGTTGACCCCAGGGCTGCAGgtatggatct ... ctggattcagGAGAAACTTCCACCTACTGATTCACGGC
EST: ATTTATCTTCATTCGCGATCACACTGAATGAGTTGACCCCAGGGCTGCAG GAGAAACTTCCACCTACTGATTCACGGCTGAGACCAGACCAGCGCCACCTAEST: gi|60400127|gb|DN232934.1|DN232934
genomic: ATTTATCTTCATTCGCGATCACACTGAATGAGTTGACCCCAGGGCTGCAGgtatggatct ... ctggattcagGAGAAACTTCCACCTACTGATTCACGGCTGAGACCAGACCAGCGCCACCTA
EST: ATTTATCTTCATTCGCGATCACACTGAATGAGTTGACCCCAGGGCTGCAG GAGAAACTTCCACCTACTGATTCACGGCTGAGACCAGACCAGCGCCACCTA
genomic: ATTTATCTTCATTCGCGATCACACTGAATGAGTTGACCCCAGGGCTGCAGgtatggatct ... ctggattcagGAGAAACTTCCACCTACTGATTCACGGCTGAGACCAGACCAGCGCCACCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCGCTGCTGTGGGAAAAGAACAAACCTGCTCCTAACCCAACTCGATACAATTTATCTTCATTCGCGATCACACTGAATGAGTTGACCCCAGGGCTGCAGgtatggatctacatgtggattgccacataaaagtgtttggtaactaagtttttgtccttaattgcttggccattcctggattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG